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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGCATACCTATAACCCTGATGGGTCAGTGCAATATGTGAAAGGAAAAATGGGTGTAGGCCAGACAATACGAGGAATAGTAGGAATATTTACAGTGGCGgtaggtgtagactctattgtacatgtctgatgctttggtgtttccattttctgttatcttaccaacttgagatgtaactag

Basic information

species Oryza sativa
transcript LOC_Os04g51610.3
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G140328_T02 (Zea mays), 5'ss of exon 14
TGGGCATACCTATAACCCTGATGGGTCAGTGCAATATGTGAAAGGAAAAATGGGTGTAGGCCAGACAATACGAGGAATAGTAGGAATATTTACAGTGGCGgtaggtgtagactctattgtacatgtctgatgctttggtgtttccattttctgttatcttaccaacttgagatgtaactag
||||||||| ||||| ||||| || || ||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||  ||||||| |||||||| |||||| |    |    |||  |||  |  |||||| ||| || || ||| ||    || |||| |||||| ||||| |||
TGGGCATACTTATAATCCTGACGGATCTGTGCAATATGTGAAAGGGAAGATGGGTGTAGGCCAGACGATACGTGGAGTAGTTAGAATATTCACAGTGGCTgtaggtattctgttctctgtttatgcatactgctttagtgcttacagtttttgg---ctcaccatcttgaggtgtaaatag

upper sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G391042_T02 (Zea mays), 5'ss of exon 14
TGGGCATACCTATAACCCTGATGGGTCAGTGCAATATGTGAAAGGAAAAATGGGTGTAGGCCAGACAATACGAGGAATAGTAGGAATATTTACAGTGGCGgtaggtgtagactctattgtacatgtctgatgctttggtgtttccattttctgttatcttaccaacttgagatgtaactag
||||||||| ||||| |||||||| || ||||||||||||||||| || ||||||||||||||||| || || ||||||||   |||||| |||||||| ||| || |    |    |||  |||  |  |||  | |||||| |  ||| |||   || |||| |||||| ||||| |||
TGGGCATACTTATAATCCTGATGGATCTGTGCAATATGTGAAAGGGAATATGGGTGTAGGCCAGACGATTCGTGGAATAGTTAAAATATTCACAGTGGCTgtaagtattctgttctctgtttatgcatactgc--tagtgtttgcgatttttgt---ctcaccatcttgaggtgtaaatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29667907|gb|CB664182.1|CB664182
EST:     TGGGTGTAGGCCAGACAATACGAGGAATAGTAGGAATATTTACAGTGGCG                         GTAACAATTGTTGTCGTGGCTGTTCCTGAAGGGTTACCATTGGCCGTCACG
genomic: TGGGTGTAGGCCAGACAATACGAGGAATAGTAGGAATATTTACAGTGGCGgtaggtgtag ... atgtaactagGTAACAATTGTTGTCGTGGCTGTTCCTGAAGGGTTACCATTGGCCGTCACG