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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATCGAGCTTGTATTGAAAGAGAAATATACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactgacattgttatgaccaatgctttatcccagatattttgtattgctagttaaataaaataattactcatagtttcagttaaatatggcttctg...

Basic information

species Oryza sativa
transcript LOC_Os04g23890.4
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g23890.3 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G032351_T01 (Zea mays), 5'ss of exon 13
GTACATCGAGCTTGTATTGAAAGAGAAATATACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactgacat----tgttatgac-caatgctttatcccagat--attttgtattgctagttaaataaaataattactcatagtttcagttaaatatggcttctg
|| |||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||| || || |  |    || | |       ||| || ||  ||||  ||||    ||||||  ||||||||     ||| ||||  ||||  |       | |||| 
GTTCATCGAGCTTGTATGGAAAGAGAAATATACTCACTATTGGATCATCCTTTTCTCCCAACATTATATACTTCATTCCAGgtcagtcttatgtgctatgctgttgtgttgtgccttgtcttagattcatttaaggttgctaaataaataaat--ggtacacataacttcatctgc-----gtttcta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|702138|gb|D48429.1|D48429
EST:     ACGCACTATTGGNTCATCCATTTCTCCCAACATTGTATACTTCATTTCAG                         ACGCCAACACATGTTTGTNTCATAACAGACTTTTGTCCGGGAGGAGAACTC
genomic: ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactga ... ctattttcagACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
EST: gi|33799059|gb|CF325389.1|CF325389
EST:     ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAG                         ACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
genomic: ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactga ... ctattttcagACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
EST: gi|14571435|gb|BI118803.1|BI118803
EST:     ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAG                         ACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
genomic: ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactga ... ctattttcagACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
EST: gi|58587914|gb|CF986222.1|CF986222
EST:     ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAG                         ACGCCAACACATGTTTGTCTCATAACAG
genomic: ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactga ... ctattttcagACGCCAACACATGTTTGTCTCATAACAG
EST: gi|29615865|gb|CB620877.1|CB620877
EST:     ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAG                         ACGCCAACACATGTTTGTCTCATAACAGA
genomic: ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactga ... ctattttcagACGCCAACACATGTTTGTCTCATAACAGA
EST: gi|29686409|gb|CB682684.1|CB682684
EST:     ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAG                         ACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
genomic: ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactga ... ctattttcagACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
EST: gi|29684157|gb|CB680432.1|CB680432
EST:     ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAG                         ACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
genomic: ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactga ... ctattttcagACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
EST: gi|29646469|gb|CB651476.1|CB651476
EST:     ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAG                         ACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC
genomic: ACGCACTATTGGATCATCCATTTCTCCCAACATTGTATACTTCATTTCAGgttagactga ... ctattttcagACGCCAACACATGTTTGTCTCATAACAGACTTTTGTCCGGGAGGAGAACTC