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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTGAGGACAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaacataatttttcctttgaaattccttccggttattatcttttgttttattggcttatatttccttttctgcttgtag

Basic information

species Oryza sativa
transcript LOC_Os03g63020.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63020.4 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G045241_T05 (Zea mays), 5'ss of exon 15
AATCCAAGGTTGGAACTGAACCTGTGGGATTTTGGTACAGAACCTGAGGACAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaacataatttttcctttgaaattccttc--cggttattatcttttgttttattggcttatatttccttttctgc-ttgtag---------------
 | ||||| |||||||||||||||||||||||  | ||||||||||| ||      ||||||||||||||| ||||| |||||||||||| ||||||||||||| | |   | ||| || | |||  |||         |  | |  |||  | ||   |||       | || ||   | |||                  
GAACCAAGATTGGAACTGAACCTGTGGGATTTCAGCACAGAACCTGATGATTGTGTCCTTGATTTAACTCTCAGTCTGAAGCCAAGTTTTTCTGGAACAGgtgcgtga---attttatcttgtgaggttcaagaaatactcgtcacttttcatcttgccggccgtggcatgctgtttcacattgctatttttcgtattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628841|gb|CB633852.1|CB633852
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29638287|gb|CB643296.1|CB643296
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29613155|gb|CB618168.1|CB618168
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29613395|gb|CB618408.1|CB618408
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29644979|gb|CB649986.1|CB649986
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29613120|gb|CB618133.1|CB618133
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|33801021|gb|CF326384.1|CF326384
EST:     TGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: TGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29633044|gb|CB638053.1|CB638053
EST:     AAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: AAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29666009|gb|CB662284.1|CB662284
EST:     AACTACCCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: AACTA-CCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|34996388|gb|CF569133.1|CF569133
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29666008|gb|CB662283.1|CB662283
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|89167683|gb|CI018289.1|CI018289
EST:     AAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: AAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|218497584|gb|FG955131.1|FG955131
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|8856640|gb|AU093958.1|AU093958
EST:     AACTACCTTGGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: AACTACCTT-GATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29663527|gb|CB659802.1|CB659802
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|29656192|gb|CB652467.1|CB652467
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
EST: gi|33381337|gb|CF196680.1|CF196680
EST:     CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAG                         ATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG
genomic: CAACTACCTTGATTTAACTCTGAGTCTAAAGCCAAGTTTTCCTGGAACAGgtgcctaaca ... ctgcttgtagATTTTTCTAACAATGTTCCAGAGCATACAAAAGAG