1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGgtatgcattatctctattaccccttctaacatgcttctatgttttttttccctgaaacccgtttctattgtcgaaaatagttctataacttgatcaacac...
species | Oryza sativa |
transcript | LOC_Os03g52460.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TAGACAATAATGCGAGGATAGGGAAGAAT-TAACAATTTCCAACTCTGAG GGTGTACAGGAAGCAGATAGGACCTCTGAAGACTTCTACATCCGATCAGGCEST: gi|38481912|gb|CF965979.1|CF965979
genomic: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGgtatgcatta ... taaatttcagGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAG GGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGCEST: gi|15851940|gb|BI800216.1|BI800216
genomic: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGgtatgcatta ... taaatttcagGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAG GGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGCEST: gi|88849955|gb|CI001661.1|CI001661
genomic: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGgtatgcatta ... taaatttcagGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAG GGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGCEST: gi|66931523|gb|CX118371.1|CX118371
genomic: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGgtatgcatta ... taaatttcagGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGC
EST: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAG GGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGCEST: gi|86870685|gb|CI323561.1|CI323561
genomic: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGgtatgcatta ... taaatttcagGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGC
EST: TAAACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAG GGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGC
genomic: TAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGgtatgcatta ... taaatttcagGGTGTACAGGAAGCAGATAGGACCTCTGAAGGCTTCTACATCCGATCAGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTGCATAATAGACAAGAATGCGAGGATAGGGAAGAATGTAACAATTTCCAACTCTGAGgtatgcattatctctattaccccttctaacatgcttctatgttttttttccctgaaacccgtttctattgtcgaaaatagttctataacttgatcaacac
- - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccttc