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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTGgtatgtatatattatcaatatctgaacttcttttgtatagataattgcaatttcccttgaatctatgtgttggacaaattataaaattctaatatgggtt...

Basic information

species Oryza sativa
transcript LOC_Os03g18310.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g18310.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 13
ATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTGgtatgtatatattatca-atatctgaacttcttttgtatagataattgcaatttcccttgaatctatgtgttggacaaattataaaattctaatatgggtt
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ATTAATGACATAAGTGGTTACTTGCCTGGACGGATCGTTTTCTTCTTGgtacatacacaaaatcatatccttttgttgtgtgcacattaagactactggatatctttgcagtttggtgtacccttgtaggtcaaatcataatttgtgt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88431147|gb|CI574318.1|CI574318
EST:     ATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTG                         GTGAACTGTCATCTTACACCTCGTCCCATCCTGCTAACTAGACAAGGTGAA
genomic: ATCAATGATATAAGTGGTTACTTGCCTGGCCGGATTGTTTTCTTCTTGgtatgtatat ... actgttacagGTGAACTGTCATCTTACACCTCGTCCCATCCTGCTAACTAGACACGGTGAA