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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAATGGAGAAGAGAGCTGTAATGGCCGAAACTATGTTGGAAGCTACAAAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAGgtatgtttaaactcctatgctatatgtccagtatcatggatgagttctgatcaaatgataattattaattaagtaaatttcataaaacacacttattatg...

Basic information

species Oryza sativa
transcript LOC_Os03g17540.3
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G095868_T02 (Zea mays), 5'ss of exon 16
GACAAATGGAGAAGAGAGCTGTAATGGCCGAAACTATGTTGGAAGCTACAAAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAGgtatg-tttaaactcctatgctatatgtccagtatcatggatgagttctgatcaaatgataattattaat---taagtaaatttcataaaacacacttattatg
 ||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||| |||||| |||| |||||||| || |||| | ||||||||  |||   || |  | | |  |  | || ||| |   | | |      |  | || || |    ||   ||  ||||||    |||  | ||  |  || 
CACAAATGGAGAAGAGAGCTGTAATGGCAGAAACAATGCTGGAAGCTACAAAGCAATACCAGGCTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAGgtattcttttggctacacttccacttcccaagcatcctttttta-tcgaacgcgcaggagaactgcgcatctttatataaattagggaaagtaaac--aacat-

upper sequence: LOC_Os03g17540.1 (Oryza sativa), 5'ss of exon 17
lower sequence: GRMZM2G154883_T02 (Zea mays), 5'ss of exon 16
GACAAATGGAGAAGAGAGCTGTAATGGCCGAAACTATGTTGGAAGCTACAAAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAGgtatgtttaaactcctatgctatatgtccag-tatcatggatgagttctgatcaaatgataat-----tattaattaagtaaatttcataaaacacacttattatg
 ||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||  |||||| |||| |||||||| || |||| | ||||||    ||  |||    | | |    || || |  | | ||  |  ||      | |    ||     |  | || ||     | ||   |||||       ||  
CACAAATGGAGAAGAGAGCTGTAATGGCAGAAACAATGCTGGAAGCTACAAAGCAATACCAGGTTGGGCAGGTTAAAGCCAACCAATCTTTCACTTCAAGgttaacttccact----ttccaagcatctagatcacttagactatctccagcagactttctatcccactccttatcaaactcctctctgcaaacagtgcatcta--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33800838|gb|CF326291.1|CF326291
EST:     AAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAG                         TTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCA
genomic: AAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAGgtatgtttaa ... tcttttgtagTTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCA
EST: gi|88305777|gb|CI633347.1|CI633347
EST:     AAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAG                         TTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCA
genomic: AAGCAGTACCAGGCAGGGCAGTTTAAGGCCAACCAGTCCTTCAATCCAAGgtatgtttaa ... tcttttgtagTTCACCTCGTGCTGCCCCTCAGTCTGGGAAGCCAAATCAAGATCCTAACCA