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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCCTGCCTAGTATACCTTTCTGCTCATAACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagtataggatatactacagccttatccgctcttcattgcagccatttcttcagtagctcttagctcttagcctttaggattcatcatatactaggttgctaattacttctgctctatctgcag

Basic information

species Oryza sativa
transcript LOC_Os03g11734.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88843252|gb|CI372152.1|CI372152
EST:     ATCCCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|56550155|gb|CX056259.1|CX056259
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGA
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGA
EST: gi|89196195|gb|CI397197.1|CI397197
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|88451135|gb|CI534128.1|CI534128
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|89185192|gb|CI050926.1|CI050926
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGNCCATGG-TGTTTCCTCCGGAAGTGATGGGTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTT-CCTCCGGAAGTGATGGGTTT
EST: gi|88445912|gb|CI549635.1|CI549635
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|89184487|gb|CI047052.1|CI047052
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|86498292|gb|CI140925.1|CI140925
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|86430518|gb|CI082941.1|CI082941
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCTTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|88408870|gb|CI554192.1|CI554192
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|88447424|gb|CI544298.1|CI544298
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|86533629|gb|CI173835.1|CI173835
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|86497553|gb|CI140186.1|CI140186
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|14980937|gb|BI305615.1|BI305615
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|86495252|gb|CI137885.1|CI137885
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|88427820|gb|CI554328.1|CI554328
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|86430709|gb|CI083132.1|CI083132
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCTTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|88987299|gb|CI034266.1|CI034266
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|89194404|gb|CI116841.1|CI116841
EST:     ATCGCATTAACGATCTACATGAGTCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|88275263|gb|CI395867.1|CI395867
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
EST: gi|88223496|gb|CI223345.1|CI223345
EST:     ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAG                         AATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT
genomic: ATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagt ... ctatctgcagAATGGGGGCAGCAAGGGGGCCATGGGTGTTCCTCCGGAAGTGATGGGTTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACCCTGCCTAGTATACCTTTCTGCTCATAACGGATTCATCGGTATATGGATCGCATTAACGATCTACATGAGCCTGAGGACCATAGCTAGCACTTGGAGgtatatcagtataggatatactacagccttatccgctcttcattgcagccatttcttcagtagctcttagctcttagcctttaggattcatcatatactaggttgctaattacttctgctctatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG