1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CAGAGGTGGACATGACTGGTCAGTACACACTGAAGAGCGATGTCTACAGCTTTGGAGTAGTCATGCTAGAGCTTTTGACGGGACGCAGACCTTTCGATAGgtaacttgatcttctcatcagtcgtaaccagtttccagcttgcgcataactataaatttagtgctaactgatgaacctcggtataatcgtgtgactttgcattacag
species | Oryza sativa |
transcript | LOC_Os03g08550.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ACCTTTCGATAG CACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCTEST: gi|29624949|gb|CB629960.1|CB629960
genomic: ACCTTTCGATAGgtaacttgat ... tgcattacagCACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCT
EST: TTTGGAGTAGTCATGCTAGAGCTTTTGACGGGACGCAGACCTTTCGATAG CACTAGACCGAGGTCAGAGCAGTCACTCGTGCGGTGGGCGACTCCACAGCTEST: gi|88906724|gb|CI375796.1|CI375796
genomic: TTTGGAGTAGTCATGCTAGAGCTTTTGACGGGACGCAGACCTTTCGATAGgtaacttgat ... tgcattacagCACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCT
EST: ACGCAGACCTTTCGATAG CACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCTEST: gi|29644650|gb|CB649657.1|CB649657
genomic: ACGCAGACCTTTCGATAGgtaacttgat ... tgcattacagCACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCT
EST: TTTGGAGTAGTCATGCTAGAGCTTTTGACGGGACGCAGACCTTTCGATAG CACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCTEST: gi|89191025|gb|CI392878.1|CI392878
genomic: TTTGGAGTAGTCATGCTAGAGCTTTTGACGGGACGCAGACCTTTCGATAGgtaacttgat ... tgcattacagCACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCT
EST: ACGCAGACCTTTCGATAG CACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCTEST: gi|88253840|gb|CI352466.1|CI352466
genomic: ACGCAGACCTTTCGATAGgtaacttgat ... tgcattacagCACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCT
EST: TTGACGGGACGCAGACCTTTCGATAG CACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCTEST: gi|89172730|gb|CI022609.1|CI022609
genomic: TTGACGGGACGCAGACCTTTCGATAGgtaacttgat ... tgcattacagCACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCT
EST: TTTGGAGTAGTCATGCTAGAGCTTTTGACGGGACGCAGACCTTTCGATAG CACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCT
genomic: TTTGGAGTAGTCATGCTAGAGCTTTTGACGGGACGCAGACCTTTCGATAGgtaacttgat ... tgcattacagCACTAGACCGAGGTCAGAGCAGTCACTTGTGCGGTGGGCGACTCCACAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAGGTGGACATGACTGGTCAGTACACACTGAAGAGCGATGTCTACAGCTTTGGAGTAGTCATGCTAGAGCTTTTGACGGGACGCAGACCTTTCGATAGgtaacttgatcttctcatcagtcgtaaccagtttccagcttgcgcataactataaatttagtgctaactgatgaacctcggtataatcgtgtgactttgcattacag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT