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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattctgttctctatgatattgtaactgcatagttcaagtggcattcgtgctaataaacaagaaccaccctacggcttag

Basic information

species Oryza sativa
transcript LOC_Os03g08070.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g08070.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM5G855347_T03 (Zea mays), 5'ss of exon 5
AGCAGCTGCTGATGTGGGAGTAGCTATGCGAACAAACTCAAAAGAGAGTGCTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattctgttctcta-tgatattgtaactgcatagttcaagtggcattcgtgctaataaacaagaaccaccctacggcttag
|||||| || ||||| ||| |||| ||||||||  | ||||||||||  ||||||||||| || ||||||||||||||| |||| |||||||||||||||||| | |||| | || || || |  | |  |||  ||  |||| |    | |    |||     |  || ||  || | |   ||
AGCAGCCGCAGATGTTGGAATAGCCATGCGAACTCATTCAAAAGAGAACGCTGCCTCTGATGCAGCTTCAGTTGTTCTACTAGGCAACAGACTTTCTCAGgtaaggttctttcctgtaatgtttctttctctgagtaactcaactcaagtgc-cattaacggggatcaaacaatctcctgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87014157|gb|CI273347.1|CI273347
EST:     TGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: TGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|87030976|gb|CI270124.1|CI270124
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|86477373|gb|CI120006.1|CI120006
EST:     GCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: GCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|58611302|gb|CK039014.1|CK039014
EST:     GACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: GACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|116875530|gb|EC366038.1|EC366038
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|116875017|gb|EC365525.1|EC365525
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|29681030|gb|CB677305.1|CB677305
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTTTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|29622947|gb|CB627958.1|CB627958
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|29662866|gb|CB659141.1|CB659141
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|116875544|gb|EC366052.1|EC366052
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|116875028|gb|EC365536.1|EC365536
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
EST: gi|87027726|gb|CI274290.1|CI274290
EST:     CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAG                         GTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA
genomic: CTGCCTCTGACGCGGCTTCAGTTGTTCTATTAGGAAACAGACTTTCTCAGgtaggattct ... tacggcttagGTAATGGATGCTTTATCACTTTCGAAAGCAACTATGGCCAAAGTTCACCAA