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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGCTAACACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATgtaagcatctggggtgccattcttgtgttcttacgtgattttcatctatcttttacacgtctttgtgtacaatgcaatttacag

Basic information

species Oryza sativa
transcript LOC_Os03g02170.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02170.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G092776_T03 (Zea mays), 5'ss of exon 16
TCTGCTAACACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATgtaagcatctg-gggtgcca-ttcttgtgttcttacgtgattttcatctatcttttacacgtctttgtgtacaatgcaatttacag
 ||||| || |||||  ||||||||||||||||||||||||| ||||||||||| || |||||||| || ||||| || ||||  |||| ||| | ||  |||   ||| ||||||         ||| ||   | ||||||||
CCTGCTTACCCAAGGACTGGCTGGCATCCAGGCCATTGATGTGCCTGGTGTTGAGAACgtaagcatttgtgggtgacaattctcatgttttta-gcgaggttccattat-ttttac---------tgtgca---cgatttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86596963|gb|CI270759.1|CI270759
EST:     CACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAAT                         GTCGATGTTACGGAGCTTGTCGATGGCCATTCGTCTTACCTGTCGGCAGCA
genomic: CACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATgtaagcatct ... caatttacagGTCGATGTTACGGAGCTTGTCGATGGCCATTCGTCTTACCTGTCGGCAGCA
EST: gi|86822036|gb|CI357753.1|CI357753
EST:     CACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAAT                         GTCGATGTTACGGAGCTTGTCGATGGCCATTCGTCTTACCTGTCGGCAGCA
genomic: CACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATgtaagcatct ... caatttacagGTCGATGTTACGGAGCTTGTCGATGGCCATTCGTCTTACCTGTCGGCAGCA
EST: gi|88278741|gb|CI399741.1|CI399741
EST:     CACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAAT                         GTCGATGTTACGGAGCTTGTCGATGGCCATTCGTCTTACCTGTCGGCAGCA
genomic: CACAAGGGTTGGCTGGCATCCAGGCCATTGATGTCCCTGGTGTTGAAAATgtaagcatct ... caatttacagGTCGATGTTACGGAGCTTGTCGATGGCCATTCGTCTTACCTGTCGGCAGCA