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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgctgtaaacgtttaaaacattacgttccttctgtggcatatgagtatgctgaaactagtatcttttctatgtgcacag

Basic information

species Oryza sativa
transcript LOC_Os02g58340.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G133919_T01 (Zea mays), 5'ss of exon 14
GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgctgtaaacgtttaaaacattacgttcc-ttctgtggc-atatgagtatgctgaaac--tagtatcttttctatgtgcacag-----
| |||||||| ||||||||||||||||||||||||  | | |||     |  |   | ||  |||   | ||||    |||    || | |||  |  || || | | || |||| |         
GTGGCTATGCTGCTGGATACTACAGTTACAAGgtaggtggttgttgctctgaatgcccttgtgttgtgtcctgtctttatactcctaggttgaggcgctaataccatgtc-atgtccttcattcag

upper sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA09G33490.1 (Glycine max), 5'ss of exon 14
GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgctgtaaacgtttaa-aacattacgttccttctgt----ggcatatgagtatgctgaaactagtatcttttctatgtgcacag----------------------------------------------------------------------------------------------------
| || ||||||||||||||||| |||||||||||| ||| ||| |    |||||  |   | |    ||| |||     | || |   |  | ||    |   |  |||| |   | || |                                                                                                     
GTGGATATGCAGCTGGATACTATAGTTACAAGgtacatt-ctgcattgctttaatgatgattcacatcttttgtcttgaggatcttttttggatgtgttttccacttttttttctttcataattgtggtagactcccctttcctttatagaactctccctgtccatccaatgagtggagaaagaactatttatatcttatggtgaatttgtctgttatgcag

upper sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 14
lower sequence: AT5G10540.1 (Arabidopsis thaliana), 5'ss of exon 14
GAGGCTATGCAGCTGGATACTACAGTTACAAGgta-----tattgctgtaaacgtttaaaacattacgttccttctgtggcat--atgagtatgctgaaactagtatcttttctatgtgcacag-----------------
| || ||||||||||||||||||||||||||||||     ||||  | |     | || ||     || | |  | ||   ||  | ||   | ||    || ||    | ||||  | |||                   
GTGGTTATGCAGCTGGATACTACAGTTACAAGgtaaaatatattcttttgtttctatataattcaccgatgcagcagttctattcacgatggttctctg-ctggtcaaatatctaaatacacttttgtggacaacgtgcag

upper sequence: LOC_Os02g58340.1 (Oryza sativa), 5'ss of exon 14
lower sequence: AT5G65620.1 (Arabidopsis thaliana), 5'ss of exon 14
GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgctgtaaacgtttaaaacattacgttccttctg---tggcatatgagtatgctgaaactagtatcttttctatgtgcacag
| || |||||||||||||| ||||||||||||||| |||     |    |||| |  || ||   |  | |    |  ||    | ||| || |||  | |   | |   |      |||
GGGGATATGCAGCTGGATATTACAGTTACAAGgtaaatttgaaaatctctttatactataaccgactctgtaaattctcactcaaatat-ctaaaaaaactggatgtgaaaaacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87010666|gb|CI312358.1|CI312358
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86489837|gb|CI132470.1|CI132470
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAACATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|29685086|gb|CB681361.1|CB681361
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88966578|gb|CI353129.1|CI353129
EST:     GCAGGAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACATTGGT
genomic: GCAGGAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|27577469|gb|CB000164.1|CB000164
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86525997|gb|CI166203.1|CI166203
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86437668|gb|CI119588.1|CI119588
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88415868|gb|CI536022.1|CI536022
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|29628315|gb|CB633326.1|CB633326
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86596740|gb|CI286653.1|CI286653
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|89183340|gb|CI045905.1|CI045905
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|29629259|gb|CB634270.1|CB634270
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|3107195|gb|D42935.1|D42935
EST:     GGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86497160|gb|CI139793.1|CI139793
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88223547|gb|CI223396.1|CI223396
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|87005786|gb|CI316205.1|CI316205
EST:     GAGGCTAGGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86906176|gb|CI320107.1|CI320107
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCACCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86889992|gb|CI319981.1|CI319981
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTTAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88907988|gb|CI090584.1|CI090584
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88220405|gb|CI219965.1|CI219965
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|163920194|gb|EG714428.1|EG714428
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|87040458|gb|CI195080.1|CI195080
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|87036488|gb|CI191110.1|CI191110
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88996615|gb|CI389281.1|CI389281
EST:     GAGGCTATGCAGCT-GATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTTATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88446136|gb|CI552642.1|CI552642
EST:     AGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: AGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|58613168|gb|CK040880.1|CK040880
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|87021331|gb|CI295390.1|CI295390
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88254054|gb|CI352680.1|CI352680
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|87041614|gb|CI196236.1|CI196236
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88843387|gb|CI372287.1|CI372287
EST:     GGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86883842|gb|CI328790.1|CI328790
EST:     CTATGCAGCTGGGTACTACACTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: CTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86862960|gb|CI331761.1|CI331761
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88971200|gb|CI387167.1|CI387167
EST:     GCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|86862751|gb|CI331642.1|CI331642
EST:     ATATTTGCAGGAGGCTATGCACCTGGATACTACAGTTACAAT                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACCTTGGT
genomic: ATATTTGCAGGAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|22306852|gb|BQ908074.1|BQ908074
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|22305323|gb|BQ906545.1|BQ906545
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCACTTTGAAGACGTTGG
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCA-TTTGAAGACGTTGG
EST: gi|66912656|gb|CX099504.1|CX099504
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGGCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|38471500|gb|CF955631.1|CF955631
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88271562|gb|CI387615.1|CI387615
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88220356|gb|CI219916.1|CI219916
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|18387237|gb|BM420435.1|BM420435
EST:     GAGGCTATGCAGCTGGATACTGACAGTTGACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATATTGAAGACGTTG
genomic: GAGGCTATGCAGCTGGATACT-ACAGTT-ACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCAT-TTGAAGACGTTG
EST: gi|89174907|gb|CI111105.1|CI111105
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|88843719|gb|CI010977.1|CI010977
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|58610594|gb|CK038306.1|CK038306
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|313084093|gb|HO213876.1|HO213876
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
EST: gi|9864982|gb|AU100732.1|AU100732
EST:     GAGGCTATGCAGCTGGATACTACAGTTACAAG                         TGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT
genomic: GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 74 (downstream exon)
Score: 34

GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgct ... atgtgcacagTGGGCTGAAGTATTGTCAGCTGATGCATTCTCAGCATTTGAAGACGTTGGTTTGGACAATGAGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGCTATGCAGCTGGATACTACAGTTACAAGgtatattgctgtaaacgtttaaaacattacgttccttctgtggcatatgagtatgctgaaactagtatcttttctatgtgcacag

- - - - GCAGCT
- - - -  CAGCTG
- - - - -  GCTGGA