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GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGATGCTACCCTgtaagttcaagcatcatttttatctttcctttacatccagcaacaattgctaggttgcaccatgaagttcacagtgtatggatcaccaaacatacagtctgtttgtcatttaacgttgatctaagtataaaaaatgtattatatgctctttgcag
species | Oryza sativa |
transcript | LOC_Os02g58020.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGATGCTACCCT GGTGTACCTGAACAGAAACTGAGGGCACACTTGGGTTCTTTCGGTGTTACAEST: gi|27576082|gb|CA998776.1|CA998776
genomic: GGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGATGCTACCCTgtaagttcaa ... ctctttgcagGGTGTACCTGAACAGAAACTGAGGGCACACTTGGGTTCTTTCGGTGTTACA
EST: GGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGATGCTACCCT GGTGTACCTGAACAGAAACTGAGGGCACACTTGGGTTCTTTCGGTGTTACAEST: gi|3766930|gb|AU031040.1|AU031040
genomic: GGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGATGCTACCCTgtaagttcaa ... ctctttgcagGGTGTACCTGAACAGAAACTGAGGGCACACTTGGGTTCTTTCGGTGTTACA
EST: GCTTGATTTAACAGTGAACCCCCCTTTTGTACATGATGAGATGCTACCCT GGTGTAACCTGNAACAGAAAACTGAGGGCACACTTGGGGGTCTTTCCGGGGEST: gi|218495876|gb|FG947058.1|FG947058
genomic: GCTTGATTTAACAGTGAACCCCC-TTTTGTACATGATGAGATGCTACCCTgtaagttcaa ... ctctttgcagGGTGTA-CCTG-AACAGAAA-CTGAGGGCACACTTGGGT-TCTTTC-GGTG
EST: GGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGATGCTACCCT GGTGTACCTGAACAGAAACTGAGGGCACATTTGGGTTCTTTCGGTGTTACA
genomic: GGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGATGCTACCCTgtaagttcaa ... ctctttgcagGGTGTACCTGAACAGAAACTGAGGGCACACTTGGGTTCTTTCGGTGTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGCATGGCTGTATTCAATCAACACCATGTTGATGGGCTTGATTTAACAGTGAACCCCCTTTTGTACATGATGAGATGCTACCCTgtaagttcaagcatcatttttatctttcctttacatccagcaacaattgctaggttgcaccatgaagttcacagtgtatggatcaccaaacatacagtctgtttgtcatttaacgttgatctaagtataaaaaatgtattatatgctctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG