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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGATCTTGGATTGGTCTCGCAATGCTGTCTTACGAAGCATGTTTTTAAGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaatgttctaccaattatttttgcccgattttgtagttttttacctttattttgtagtaatttatattcctttaatttatag

Basic information

species Oryza sativa
transcript LOC_Os02g45070.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58681347|gb|CK070034.1|CK070034
EST:     AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAG                         GTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
genomic: AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaat ... taatttatagGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
EST: gi|38471881|gb|CF956012.1|CF956012
EST:     AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAGAATCAATGTTAAG                         GTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
genomic: AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaat ... taatttatagGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
EST: gi|58666415|gb|CK055101.1|CK055101
EST:     AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAG                         GTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
genomic: AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaat ... taatttatagGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
EST: gi|33801495|gb|CF326620.1|CF326620
EST:     AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAG                         GTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
genomic: AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaat ... taatttatagGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
EST: gi|58674483|gb|CK063170.1|CK063170
EST:     AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAG                         GTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
genomic: AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaat ... taatttatagGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
EST: gi|33797058|gb|CF324395.1|CF324395
EST:     AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAG                         GTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
genomic: AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaat ... taatttatagGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
EST: gi|58664170|gb|CK052856.1|CK052856
EST:     AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAG                         GTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
genomic: AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaat ... taatttatagGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
EST: gi|58653440|gb|CK042120.1|CK042120
EST:     AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAG                         GTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC
genomic: AGATGAGCAAACAGTATTTAGCAAACGTTGCCCTTAAAATCAATGTTAAGgttcggaaat ... taatttatagGTGGGAGGAAGAAATACAGTACTTGTTGATGCTTTGACAAGGAGGATTCCC