1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
AGTTCAAGTAAACAAAAGGTTTCTGCCATTGAAAGTTTATTGAAGGGTGTAAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTGgtattctttaagctgcttaattggagtttgctctttcattatgtagtttaaaattcttagctattgctttccgacttatattataaatacttaagaaatctcaatttcttttttcttttcctcctagtgcag
species | Oryza sativa |
transcript | LOC_Os02g40430.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTG TEST: gi|29623078|gb|CB628089.1|CB628089
genomic: AAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTGgtattcttta ... cctagtgcag-
EST: AAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTG TEST: gi|29627499|gb|CB632510.1|CB632510
genomic: AAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTGgtattcttta ... cctagtgcag-
EST: AAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTG GAGTTGATCCTCCATCCTCTCGTGATCCTCCTATCCCACTTGCTGCAACTGEST: gi|29636019|gb|CB641028.1|CB641028
genomic: AAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTGgtattcttta ... cctagtgcagGAGTTGATCCTCCATCCTCTCGTGATCCTCCTATCCCACTTGCTGCAACTG
EST: AAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTG GAGTTGATCCTCCATCCTCTCGTGATCCTCCTATCCCACTTGCTGCAACTGEST: gi|29632384|gb|CB637393.1|CB637393
genomic: AAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTGgtattcttta ... cctagtgcagGAGTTGATCCTCCATCCTCTCGTGATCCTCCTATCCCACTTGCTGCAACTG
EST: GGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTGTGCAG
genomic: GGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATC-T-T---Ggtattcttta ... cctagt
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCAAGTAAACAAAAGGTTTCTGCCATTGAAAGTTTATTGAAGGGTGTAAGCGGCCGGCAAAATTTCTCAGCTATGCGCTCAACAAGCTTGGATCTTGgtattctttaagctgcttaattggagtttgctctttcattatgtagtttaaaattcttagctattgctttccgacttatattataaatacttaagaaatctcaatttcttttttcttttcctcctagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT