1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGTCATATGGGCTACGCTACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctgttccatccttcttcccccatttctttctgctacactaataacttcttcacttgcattgcgccttgttcccaacacatgccatatccaagatgaactatccgtgttggatgtagaggccgggtttttaatccattatatatatataaaggatgaaccatgatatcatcttccatttttttgacag
species | Oryza sativa |
transcript | LOC_Os02g38840.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|86862356|gb|CI345349.1|CI345349
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88273363|gb|CI388819.1|CI388819
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88275573|gb|CI396177.1|CI396177
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88245497|gb|CI245346.1|CI245346
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCTAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88996866|gb|CI389532.1|CI389532
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88518045|gb|CI445598.1|CI445598
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|86432491|gb|CI086102.1|CI086102
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88472832|gb|CI410103.1|CI410103
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: CAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|89176067|gb|CI043088.1|CI043088
genomic: CAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|86843192|gb|CI341351.1|CI341351
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88256221|gb|CI358609.1|CI358609
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|89180521|gb|CI044800.1|CI044800
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88517913|gb|CI444802.1|CI444802
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: AAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88237644|gb|CI237493.1|CI237493
genomic: AAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|86535002|gb|CI175208.1|CI175208
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88376598|gb|CI537902.1|CI537902
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88516425|gb|CI444079.1|CI444079
genomic: TATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTNTTCGCCGAGACGAACTGAAGEST: gi|88262014|gb|CI365590.1|CI365590
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCACCAGCACTCTGTTCGCCGAGACGAACTGAAGEST: gi|89192387|gb|CI049848.1|CI049848
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88420370|gb|CI559616.1|CI559616
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|29616737|gb|CB621749.1|CB621749
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|89190198|gb|CI392248.1|CI392248
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88845594|gb|CI084519.1|CI084519
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88478723|gb|CI415994.1|CI415994
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88409040|gb|CI556748.1|CI556748
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: CGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|89178707|gb|CI391705.1|CI391705
genomic: CGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88257654|gb|CI360240.1|CI360240
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|218492006|gb|FG967745.1|FG967745
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCNGCAGCACTTTGTTCGCCGAGACGAACTGAATEST: gi|89177186|gb|CI043689.1|CI043689
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88242908|gb|CI240759.1|CI240759
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88447385|gb|CI544259.1|CI544259
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: GTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88540877|gb|CI468953.1|CI468953
genomic: GTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: GTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88537565|gb|CI466523.1|CI466523
genomic: GTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88460847|gb|CI552983.1|CI552983
genomic: TGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: GACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88487048|gb|CI424319.1|CI424319
genomic: GACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: GACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAGEST: gi|88531486|gb|CI459965.1|CI459965
genomic: GACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
EST: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATAC GATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
genomic: TACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctg ... tttttgacagGATAAGAGGGGATCAGCAGCACTTTGTTCGCCGAGACGAACTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGAAATGGCAACCGAACAAAGCGAGCTGGATCTGTCATATGGGCTACGCTACCAAGACGTGAAGATCCCAGAAGCGTATGAACGCCTCATCCTGGATACgtacgtcctgttccatccttcttcccccatttctttctgctacactaataacttcttcacttgcattgcgccttgttcccaacacatgccatatccaagatgaactatccgtgttggatgtagaggccgggtttttaatccattatatatatataaaggatgaaccatgatatcatcttccatttttttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC