1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AAAACTTAAAGATGCACCTGTTATTGGTGCTTTTAATCCTGTGAAGGGGGAAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttcacttctatcctgatcttgaaagttgcctgtatgtctcacttctatgttgcaagtcaaaactaattatgtgttggggtcatggtttaggttt...
species | Oryza sativa |
transcript | LOC_Os02g32350.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG WTTGTGAATGGACEST: gi|2311450|gb|C27605.1|C27605
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGAC
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGGATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAAEST: gi|29622581|gb|CB627592.1|CB627592
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATAG ATTGTGAATGGACCTCGAEST: gi|29674464|gb|CB670739.1|CB670739
genomic: AATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAAT-Ggtacgtttca ... tgatctgcagATTGTGAATGGACCTCGA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG GTTGTGAATGGACCTCEST: gi|163928125|gb|EG712993.1|EG712993
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTC
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAAEST: gi|218498571|gb|FG951792.1|FG951792
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAAEST: gi|88310682|gb|CI672545.1|CI672545
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AAATAGTCCTGGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAAEST: gi|325493413|gb|JG457937.1|JG457937
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCCATG ATTGTGAATGGACCTCGAGGAGCTGTGTCATCTCAAGACGACCAGTTTGAAEST: gi|29623578|gb|CB628589.1|CB628589
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG AGTGTGAATGGACCTCGAEST: gi|29623985|gb|CB628996.1|CB628996
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGA
EST: GAATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAAEST: gi|29627293|gb|CB632304.1|CB632304
genomic: GAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AAATAGTTCGGGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAAAA AGTGTGAATGGACCTCGAEST: gi|29631512|gb|CB636521.1|CB636521
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGAEST: gi|38476461|gb|CF960594.1|CF960594
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAAEST: gi|88593193|gb|CI711352.1|CI711352
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAAEST: gi|29644259|gb|CB649266.1|CB649266
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGACCTCGAEST: gi|33683617|gb|CF311856.1|CF311856
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAAEST: gi|27576732|gb|CA999426.1|CA999426
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
EST: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATG ATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
genomic: AAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttca ... tgatctgcagATTGTGAATGGACCTCGAGGAGCTGTATCATCTCAAGACGACAAGTTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACTTAAAGATGCACCTGTTATTGGTGCTTTTAATCCTGTGAAGGGGGAAATAGTTCTTGCTCAGTTTAGTGCTGACAACTCCTGGAATAGAGCAATGgtacgtttcacttctatcctgatcttgaaagttgcctgtatgtctcacttctatgttgcaagtcaaaactaattatgtgttggggtcatggtttaggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA