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AGCTCTTATTGCTCACTTCCAGAACTCCAGTTTGATGAATGAGGACAAGCGCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctttctctctctctctctctctctctctctctctctctctcgttgataaatggagttaaagcagcagatgacacttggacacagtttgctgtt...
species | Oryza sativa |
transcript | LOC_Os02g31290.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAG GAACCATTCCCTATGGGTACAAACATCEST: gi|24208728|gb|AU225755.1|AU225755
genomic: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctt ... tgtccattagGAACCATTCCCTATGGGTACAAACATC
EST: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAG GAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGAEST: gi|58691922|gb|CK080609.1|CK080609
genomic: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctt ... tgtccattagGAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGA
EST: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAG GAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGAEST: gi|58657140|gb|CK045820.1|CK045820
genomic: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctt ... tgtccattagGAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGA
EST: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAG GAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGAEST: gi|4969156|gb|AU066060.1|AU066060
genomic: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctt ... tgtccattagGAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGA
EST: GCTGCCGNCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAG GAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGAEST: gi|58696242|gb|CK084929.1|CK084929
genomic: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctt ... tgtccattagGAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGA
EST: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAG GAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGAEST: gi|88840701|gb|CI080155.1|CI080155
genomic: GCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctt ... tgtccattagGAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGA
EST: CCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAG GAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGA
genomic: CCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctt ... tgtccattagGAACCATTCCCTATGGGTACAAACATCCGAGCCAGGTCAGGGAGATCGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTCTTATTGCTCACTTCCAGAACTCCAGTTTGATGAATGAGGACAAGCGCTGCCGCCCCATACTATTCCATTCGGATGGTCCTAATGCAGGAGATCAGgtatgatctttctctctctctctctctctctctctctctctctctctcgttgataaatggagttaaagcagcagatgacacttggacacagtttgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctct