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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTCATCCCTGGGATGGGTGAGTTTGGGGATAGGTACTTTGGGACAGATGATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacattgcttgttttttattttttgttccctacgagagtgttctattgtctgatgcggattcaagcttatcggcataacaattgacacaactcatgcag

Basic information

species Oryza sativa
transcript LOC_Os02g17320.3
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17320.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G169462_T01 (Zea mays), 5'ss of exon 14
GCGTCATCCCTGGGATGGGTGAGTTTGGGGATAGGTACTTTGGGACAGATGATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacattgcttgttttttattttttgttccctacgagagtgttctattgtctgatgcggattcaagcttatcggcataacaattgacacaactcatgcag
| ||| | ||||||||||| || ||||| || || ||||| || |||||||| ||||||||||| || ||||| || ||||| || ||||||||||||||||| |       || | ||  | |||| | |  |          | | |  |  ||| | | | || |   | | |    |||     |              
GTGTCGTACCTGGGATGGGCGAATTTGGAGACAGATACTTCGGAACAGATGAATATCAGTCATCGACGCCATTTTTCTGTGACGATAAAAATCGTGTCAGgtggg------tttctattcaacttttcgctggcgcacttgccctgcaaggggttgacgggtactctactctttggttgaaactgcgcag-------------

upper sequence: LOC_Os02g17320.2 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G034143_T01 (Zea mays), 5'ss of exon 15
GCGTCATCCCTGGGATGGGTGAGTTTGGGGATAGGTACTTTGGGACAGATGATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacattgcttgttttttattttttgttccctacgagagtgttctattgtctgatgcggattcaagcttatcggcataacaattgacacaactcatgcag
| ||  | ||||||||||| || ||||| || || |||||||| |||||||||||||||||||| || |||||||||||||| || ||||||||||||||||||||   |  ||  |||    |  | | ||           | |  | |  || |  |||  |  | |    | |                          
GTGTTGTGCCTGGGATGGGCGAATTTGGAGACAGATACTTTGGAACAGATGATTATCAGTCATCGACGCCATTCTTTTGTGACGATAAAAATCGTGTCAGgtgagattctatttacttt--gctactagctcaaatttttgccgcttaactagctcacccggcctgcaaccgtgcag--------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88254969|gb|CI353793.1|CI353793
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|29628991|gb|CB634002.1|CB634002
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|16578897|gb|BI812992.1|BI812992
EST:     TGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCAGGCATC
genomic: TGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGC-GGCATC
EST: gi|86598197|gb|CI354814.1|CI354814
EST:     GATTATCAGTCATCAACACCATTCTTTTTTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGCCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|88262887|gb|CI364465.1|CI364465
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|157650102|gb|EX449736.1|EX449736
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTAAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|86505781|gb|CI148414.1|CI148414
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGCCGCCGCCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|29622912|gb|CB627923.1|CB627923
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|88273348|gb|CI388804.1|CI388804
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGC---ATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|29675419|gb|CB671694.1|CB671694
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|33681231|gb|CF309470.1|CF309470
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
EST: gi|29622926|gb|CB627937.1|CB627937
EST:     GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAG                         GCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA
genomic: GATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGTCAGgtgagacatt ... actcatgcagGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCA