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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctactgaagtgctgactttggattcattatttatttatttgcatggattgcatatgtgctctattgaagctcataatctgattgttttggtaca...

Basic information

species Oryza sativa
transcript LOC_Os02g17320.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17320.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G034143_T03 (Zea mays), 5'ss of exon 15
GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctactgaagtgctgactttggattcattatttatttatttgcatggattgcatatgtgctctattgaagctcataatctgattgttttggtaca--
|||||||||| ||||| || || || || || ||||| ||||||||||| ||| |||||||||| || || |||||||| |||||||||||  |||||||||||   |    |   | |||    || |  ||   | |  | ||     |||| |      | || | ||  |  | | ||   
GAAATTCAGCAGTTCAGGCCATCTCCCTTCTATTGAAGAAGGGTGTACAAGAAGCAAATATTATATTCCTTAATCTTATTTCAgtaagtcttatgaagtgctgagcattttcttggt-tttgcggatgtatataactagtctttggagcttatttataggattgatgt-atcatccttgcacccc

upper sequence: LOC_Os02g17320.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G169462_T01 (Zea mays), 5'ss of exon 13
GAAATTCAGCTGTTCAAGCTATATCTCTACTCTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctactgaagtgctgactttggattcattatttatttatttgcat-ggattgca-tatgtgctctattgaagctcataatctgattgttttggtaca
|||| ||||| |||||||| || || || || || || ||||||||||||||| ||||||| || ||||| |||||||| ||||||||||   |||||| |||    |    |   || |  ||       || |||||| | |||    | | ||     ||   ||  || |    |||    
GAAACTCAGCAGTTCAAGCCATCTCCCTTCTATTAAAGAAGGGTGTACAGGAAGCAAATATCATATTTCTTAATCTTATTTCAgtaagtcctatgaagtcctggacattttcttgctagtctttggagcttatcggattgaaatataatttttttttctattccctattggagtaccatggat--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88273348|gb|CI388804.1|CI388804
EST:     CTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: CTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|29633369|gb|CB638378.1|CB638378
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|86886699|gb|CI334613.1|CI334613
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|87037876|gb|CI192498.1|CI192498
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|3760815|gb|C98069.1|C98069
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|33683400|gb|CF311639.1|CF311639
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTA-TTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|87029276|gb|CI276544.1|CI276544
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|88233330|gb|CI233179.1|CI233179
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|86843464|gb|CI339536.1|CI339536
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|86498530|gb|CI141163.1|CI141163
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|86505781|gb|CI148414.1|CI148414
EST:     ATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: ATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|29675373|gb|CB671648.1|CB671648
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|29627016|gb|CB632027.1|CB632027
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|86537180|gb|CI177386.1|CI177386
EST:     TGAAAAAGGGTGTACAGGAAACAAATATCATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|29669519|gb|CB665794.1|CB665794
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|29643326|gb|CB648333.1|CB648333
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|86536638|gb|CI176844.1|CI176844
EST:     TGAAAAAGGGTGTACAGGAAACAAATATCATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
EST: gi|86486730|gb|CI129363.1|CI129363
EST:     TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCA                         GCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC
genomic: TGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAgtaagtctac ... attgttccagGCTCCCCAAGGAGTGCATGTGGTCAGCAAGAGATTTCCAAGAGTGAAGATC