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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTTTGAGCCAGCCAATGTGCTCCTTGGTAATGGATTCTCAGTACGTGTCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatctagtgttgtacaccaaccttgtggttgtgatacttcggcttttccgtcgcaagcagttctgatacatttcctaaaattcctgaagtccaatt...

Basic information

species Oryza sativa
transcript LOC_Os02g07960.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07960.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G335638_T01 (Zea mays), 5'ss of exon 14
GAATTTTGAGCCAGCCAATGTGCTCCTTGGTAATGGATTCTCAGTACGTGTCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatctagtgttgtacaccaaccttgtggttgt-gatacttcggcttttccgtcgcaagcagttctgatacatttcctaaaattcctgaagtccaatt-----
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GAATTTTGAACCAGCCAACGTGCTCCTCGACAATAGATGCTCAGTGCGTGTTGCTGAATGTGGGCTGGCACAATTGATGGCGTCTGGTTCTGTTACACAGgtaacctcttcgatt------cagctttgccgttatcaataatacaaaattgtggctgaaagaactgaactcatagcgcatacacttcatggtgcacggatcacgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669825|gb|CK058511.1|CK058511
EST:     TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|29621906|gb|CB626917.1|CB626917
EST:     TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|29656568|gb|CB652843.1|CB652843
EST:     TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|58611356|gb|CK039068.1|CK039068
EST:     TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|29626065|gb|CB631076.1|CB631076
EST:     TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|29626028|gb|CB631039.1|CB631039
EST:     GCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TCGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: GCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|29640907|gb|CB645914.1|CB645914
EST:     CAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: CAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|66927345|gb|CX114193.1|CX114193
EST:     GGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: GGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|29674397|gb|CB670672.1|CB670672
EST:     TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|29671438|gb|CB667713.1|CB667713
EST:     TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
EST: gi|29638004|gb|CB643013.1|CB643013
EST:     TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAG                         TTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT
genomic: TCGCTGAATGTGGACTGGCAGAATTGACGCTGTCAGGTTCTGTTACACAGgtaacatcta ... tttattccagTTGTCAGGTCGCATGAGGGCACTGCTGAATTATGAAGCTCCTGAAATCCAT