Sequence
atgc intronic sequence ATGC exonic sequenceACTTTTGATCATCCAAATCCCTCACCAAATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACGgtatgtagctattgagttatacttgtgattatactttgctatgttacaaggtagaaacatctatatatttggcagaatttgactctactcattcccatcattttggcag
Basic information
species | Oryza sativa |
transcript | LOC_Os02g04660.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g04660.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G011456_T03 (Zea mays), 5'ss of exon 19
ACTTTTGATCATCCAAATCCCTCACCAAATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACGgtatgtagctat------tgagttatacttgtgatt---atactttgctatgttaca-aggtagaaa-------catctatatatttggcagaatttgactctactcattcccatcattttggcag
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ACTTTCACCCATCCAAATTTCTCACCAAATGCCAGCAACCAAAGGTACACCAAGTTGCAATTTGAAATGCTGCCAGACATGGGTTCATGCCTTGTGCACGgtatgcaaccatacccattgtttggattttgttattcatataaactagtaccatagatagatacagaagttggccctcactaacgctggtacccccccaccccaccc-cacccatcattttggcag
upper sequence: LOC_Os02g04660.2 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G169927_T03 (Zea mays), 5'ss of exon 19
ACTTTTGATCATCCAAATCCCTCACCAAATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACGgtatgtagctattgagttatacttgtgattatactttgctatgttacaaggtagaaacatctatatatttggcagaatttgactctactcattcccatcattttggcag
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ACTTTCACCCATCCAAATTTCTCACCAAATGCTAGCAACCAAAGGTACACCAAGTTGCAATTTGAAATGCTGCCAGATATGGGTTCATGCCTTGTGCATGgtatgcaaccat---actctacttgcaatt-tattattc-atattgtt---tattaccatagataaata-agttgtccctcacacgactatcccgcatcaatttggcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58661310|gb|CK049990.1|CK049990EST: CAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACG GATTTGCTGGATATTTTGATGCCGTATTGTATAAAGATGTTCAGGTTGGAA
genomic: CAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACGgtatgtagct ... attttggcagGATTTGCTGGATATTTTGATGCCGTATTGTATAAAGATGTTCATCTTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACTTTTGATCATCCAAATCCCTCACCAAATGCTAGTAACCAAAGGTATACCAAGTTGAAATTTGAGATACCACAAGAGACGGGATCATGCCTCGTGCACGgtatgtagctattgagttatacttgtgattatactttgctatgttacaaggtagaaacatctatatatttggcagaatttgactctactcattcccatcattttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA