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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGGgtttgtgcctaactacctttttattatcctctacatgataactctttttaccaaccttatttggccatcgattgttgttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g02750.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02750.1 (Oryza sativa), 5'ss of exon 15
lower sequence: GRMZM2G466281_T03 (Zea mays), 5'ss of exon 2
TCCCTAGCATATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGGgtttgtgcctaactaccttttt--attatcctctacatgataactcttttt--accaaccttatttggccatcgattgttgttgcag
||||| || ||||| ||||||||||||||||| ||| ||||||| |||||||||||||||| ||  ||||  |||||| ||  |||||||| |   | | ||   |||     || | || ||||   | ||  |  |||| ||||
TCCCTTGCGTATTTTCCATTTGCAATTGCAAACGCGTTGACTGCCCGGCTTGATGATGGgtctgcacctagataccttcttccattatcctttttgtaacaatagtttcacagcccatctaattttatcttcattgattgtcgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86497511|gb|CI140144.1|CI140144
EST:     TATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGG                         AAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTAC
genomic: TATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGGgtttgtgcct ... gttgttgcagAAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTAC
EST: gi|33803550|gb|CF327650.1|CF327650
EST:     TATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGG                         AAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTAC
genomic: TATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGGgtttgtgcct ... gttgttgcagAAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTAC
EST: gi|88691614|gb|CI733692.1|CI733692
EST:     TATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGG                         AAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTAC
genomic: TATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGGgtttgtgcct ... gttgttgcagAAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTAC
EST: gi|86594261|gb|CI251133.1|CI251133
EST:     CTGCACGGCTTGATGATGG                         AAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTAC
genomic: CTGCACGGCTTGATGATGGgtttgtgcct ... gttgttgcagAAACCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTAC
EST: gi|33803552|gb|CF327651.1|CF327651
EST:     TATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGG                         AAACCCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTA
genomic: TATTTCCCATTTGCAATTGCAAATGCGCTGACTGCACGGCTTGATGATGGgtttgtgcct ... gttgttgcagAAA-CCCCCTTGTTGATGAGCAGCTAGTTCTCCTAATGTACTGCTTATTTA