1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCGTCGGTGGCGAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggacctgctcatcatgatcaaacagtagtatatattgtatgcttgaacagagtttgctaattgttttttgttcag
species | Oryza sativa |
transcript | LOC_Os02g01280.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|6934866|gb|AU082403.1|AU082403
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88264131|gb|CI367905.1|CI367905
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88906229|gb|CI375301.1|CI375301
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|29631899|gb|CB636908.1|CB636908
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88996581|gb|CI389247.1|CI389247
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAGCTGCTGCTTGGAACCCCATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAAGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88978439|gb|CI384821.1|CI384821
genomic: CAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAAGTTGGCEST: gi|88270788|gb|CI386046.1|CI386046
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCA-GTTGGC
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCEST: gi|88449887|gb|CI529866.1|CI529866
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTA-GTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGC
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88263369|gb|CI367143.1|CI367143
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88266148|gb|CI377050.1|CI377050
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88834725|gb|CI370028.1|CI370028
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGCCAGTTGGCAEST: gi|88275358|gb|CI395209.1|CI395209
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|89185536|gb|CI052062.1|CI052062
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88291087|gb|CI527477.1|CI527477
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAACCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|86826727|gb|CI364251.1|CI364251
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88464262|gb|CI532197.1|CI532197
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|86884887|gb|CI314463.1|CI314463
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCACGTTGGCEST: gi|86869378|gb|CI339102.1|CI339102
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCA-GTTGGC
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88376066|gb|CI530570.1|CI530570
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCAEST: gi|88977896|gb|CI384378.1|CI384378
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
EST: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAG GTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCACTTGGCA
genomic: CAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggac ... ttttgttcagGTTTTGGATTTTAGTTTAGAAGAAGAGGAGTACCCTTTTTGGCAGTTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTCGGTGGCGAAAACATTCATCACATCAGATGCTGTTGTGGTGGACATCAAGGAGCCTGAGAAAGCAGCTGCTGCTGGGAACCCAATGGGTGGATCAGgtacacggacctgctcatcatgatcaaacagtagtatatattgtatgcttgaacagagtttgctaattgttttttgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA