1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
TGGGAAGAAAATTGGGATAGAACGAGCTGAGCGAAGCTCCTATTCTTTTCGGTCACTATTAGATGGTGGTGCACATCTGGCTTTTGGTTCTGATTGGCCTgtatgtgtttcctgaaacttaagaataaaatttgatttttattttgtagactatagataattaattgtacacatttacag
species | Oryza sativa |
transcript | LOC_Os01g72350.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGTCACTATTAGATGGTGGTGCACATCTGGCTTTTGGTTCTGATTGGCCT GTTTCAGATATTAATCCATTACAAGCTATTCGAACTGCAGTATCCCGCAAAEST: gi|29629495|gb|CB634504.1|CB634504
genomic: GGTCACTATTAGATGGTGGTGCACATCTGGCTTTTGGTTCTGATTGGCCTgtatgtgttt ... acatttacagGTTTCAGATATTAATCCATTACAAGCTATTCGAACTGCAGTATCCCGCAAA
EST: GGTCACTATTAGATGGTGGTGCACATCTGGCTTTTGGTTCTGATTGGCCT GTTTCAGATATTAATCCATTACAAGCTATTCGAACTGCAGTATTCCGCAAAEST: gi|86435575|gb|CI106808.1|CI106808
genomic: GGTCACTATTAGATGGTGGTGCACATCTGGCTTTTGGTTCTGATTGGCCTgtatgtgttt ... acatttacagGTTTCAGATATTAATCCATTACAAGCTATTCGAACTGCAGTATCCCGCAAA
EST: GGTGCACATCTGGCTTTTGGTTCTGATTGGCCT GTTTCAGATATTAATCCATTACAAGCTATTCGAACTGCAGTATCCCGCCAA
genomic: GGTGCACATCTGGCTTTTGGTTCTGATTGGCCTgtatgtgttt ... acatttacagGTTTCAGATATTAATCCATTACAAGCTATTCGAACTGCAGTATCCCGCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGAAGAAAATTGGGATAGAACGAGCTGAGCGAAGCTCCTATTCTTTTCGGTCACTATTAGATGGTGGTGCACATCTGGCTTTTGGTTCTGATTGGCCTgtatgtgtttcctgaaacttaagaataaaatttgatttttattttgtagactatagataattaattgtacacatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG