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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCCCAATTTAGATATCTTGGAGATGTTTCGATTCCCTTCGCTACAGGTGCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatcaatcttttatgtgcagttatttattcccacactaagttttctttctttctatttttgctttgtgatttcccatgtcgtaatcttgtgttc...

Basic information

species Oryza sativa
transcript LOC_Os01g46510.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46510.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM5G824843_T01 (Zea mays), 5'ss of exon 2
GGCCCCAATTTAGATATCTTGGAGATGTTTCGATTCCCTTCGCTACAGGTGCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatcaatcttttatgtgcagttatttattcccacactaagttttctttctttctatttttgctttgtgatttcccatgtcgtaatcttgtgttc--
||||||||||||| || |||||||||||||| |||||||| || || ||||||||||||||||| |||||||| |||||| |||| || || || || |||||||   | |||||| | | | |    ||    | |  |  |     ||         ||| |     |||  ||     |||| | || ||||| |    
GGCCCCAATTTAGGTACCTTGGAGATGTTTCAATTCCCTTTGCAACTGGTGCCGTTTGGCATCGAAGGCAGTTATTTGTGTCTACACCAACAACAATTGAgtaagattttaatcttctttatacttcaatgatgttcggctttttcccttgaaagaagatatctcaatattgctatgatt-atgt-gcaagcttgtatatag

upper sequence: LOC_Os01g46510.1 (Oryza sativa), 5'ss of exon 14
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 14
GGCCCCAATTTAGATATCTTGGAGATGTTTCGATTCCCTTCGCTACAGGTGCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagc-catcaatcttt-tatgtgcagttatttattcccacacta----agttttctttctttctatttttgctttgtgatttcccatgtcgtaatcttgtgttc
| || || | |||||||||||| |||||| | ||| |    ||||| || || ||||||||||| || ||| ||||||||||||| || ||||| || ||||||||  ||   ||| | ||||     | |||| || |     |     ||||  |||   | ||| ||   |||   |||    ||      ||  |       
GCCCTCAGTATAGATATCTTGGTGATGTTGCCATTGCACATGCTACTGGAGCTGTTTGGCATCGCAGACAGCTGTTTGTGGCTACACCAACCACGATTGAgtaagcatattgctctatatatgatacatgatttttttctgtcttctgccagttaccttaaatgctacttccacttg--gatgaaacaaactaaaaattgaa----

upper sequence: LOC_Os01g46510.1 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv08s0056g00040.t01 (Vitis vinifera), 5'ss of exon 15
GGCCCCAATTTAGATATCTTGGAGATGTTTCGATTCCCTTCGCTACAGGTGCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatcaatcttttatgtgcagttatttattcccacactaagttttctttctttctatttttgctttgtgatttcccatgtcgtaatcttgtgttc-
| || |||| ||||||  | ||||||||  | |||||||  ||||| ||||| |||||||| || || ||| ||||||||||||| || || ||||| |||||||  || | |   | |   |||    ||   |       |||    | |    |    ||| ||   ||| |||        |  | | |  |  |  
GCCCTCAATATAGATACTTGGGAGATGTGGCCATTCCCTATGCTACTGGTGCTGTTTGGCACCGGAGACAGCTGTTTGTGGCTACACCAACTACCATTGAgtaagttat-agttgatgaccagcaacacttctgtttttagttaaccaatttggagtgaactttatgtgatgttattctttgcaactcattttgttaatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58662672|gb|CK051358.1|CK051358
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGACATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58664662|gb|CK053348.1|CK053348
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58666107|gb|CK054793.1|CK054793
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58666827|gb|CK055513.1|CK055513
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58665271|gb|CK053957.1|CK053957
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58587152|gb|CF985460.1|CF985460
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58612809|gb|CK040521.1|CK040521
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58612142|gb|CK039854.1|CK039854
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTGTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|86889062|gb|CI314678.1|CI314678
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTG
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTG
EST: gi|25804329|gb|CA760290.1|CA760290
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAAC
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAAC
EST: gi|58662716|gb|CK051402.1|CK051402
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58666361|gb|CK055047.1|CK055047
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAA
EST: gi|88399115|gb|CI603782.1|CI603782
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCAC-ACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
EST: gi|58669479|gb|CK058165.1|CK058165
EST:     GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGA                         GTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA
genomic: GCCGTTTGGCATCGTAGGCAGTTGTTTGTGGCTACGCCCACCACCATCGAgtaagccatc ... taatatccagGTGTGTCTTTGTTGATGCGGGTGTGGCTGCCATTGACATTGAAACAAAAAA