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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAGgtttctccctattccttcttcacaccctcctgcatcacactacctgagtttccccttatatatgtttgtattggcagtttgtctaacatattgttgtctg...

Basic information

species Oryza sativa
transcript LOC_Os01g43030.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g43030.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G321276_T01 (Zea mays), 5'ss of exon 3
CACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAGgtttctccctattccttcttcacaccctcctgcatcacactacctgagtttccccttatatatgtttgtattg-gcagtttgtctaacata---ttgttgtctg
||||||||||||||||| || ||||| |||||| |  ||||||| ||||||||||| ||||| || |  ||||| || |||||||| ||  ||||||| |||| |  || | | | | ||| | |     |  ||||  |  |  ||    ||| |  |  || ||||| | | ||||| ||  |      |  ||||| 
CACTATGACAGAAGAGGGCAATATGACATTGCTTTGAATAAAATCGATGAGGCTATCTCACATACACTGACTGTCATCGATTTATATTCCGTAAAGgtatctctcatttacatttacccacacccacatgt-gcactcac--acgttttgtttagacgtagttttattgcgtattttgtttactacgaagctaatgtct-

upper sequence: LOC_Os01g43030.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G047093_T01 (Zea mays), 5'ss of exon 14
CACTATGACAGAAGAGGCCAGTATGATATTGCTCTAGATAAAATTGATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAGgtttctccctattccttcttcacaccctcctgcatcacactacctgagtttccccttatatatgtttgtattggcagtttgtctaacata---ttgttgtctg
||||| ||||||||||| || ||||| |||||| |  ||||||| ||||||||||| ||||| || || ||||| || ||| |||| ||| ||||||| ||||  |     ||   ||||||  | ||     ||||  |  |  ||    ||| |  |  || | |||    ||||| ||  ||     |  ||||| 
CACTACGACAGAAGAGGGCAATATGACATTGCTTTGAATAAAATCGATGAGGCTATCTCACATACACCGACTGTCATCGATCTATATTCAGTAAAGgtgtctcattcacatttgcccacacctgcatg---tgcactcacacatgttttgtttagacgtagttttgttgcgtatttgtttactatgaagctaatgtctc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643975|gb|CB648982.1|CB648982
EST:     ATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAG                         GGGAAGATATTGCAGCATGCTGGCAATTTCTCAGCGGCTGCAGCATTGGCG
genomic: ATGAGGCTATTTCACACACGCCAACTGTAATTGATTTATACTCAATAAAGgtttctccct ... gttactttagGGGAAGATATTGCAGCATGCTGGCAATTTCTCAGCGGCTGCAGCATTGGCG