1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GACATCAAGTTTGCTGTTCATGCACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacattatttgtcattgttgttttgtaattatttgcaccaataatatagtcaactgtacgtgatatgcctcttttcag
species | Oryza sativa |
transcript | LOC_Os01g23610.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CACACCCAACTTTGTCTGAGGGTCTGGATGAGCTCTTCAAAGCTGCCAAG GTTAAGGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGAEST: gi|88284358|gb|CI405804.1|CI405804
genomic: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacat ... ctcttttcagGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
EST: CACACCCAACTTTGTGTGAGTTTCTGGATGAGCTCTTCAAAGCTGCCAAG GTTAATGCAGGTNTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGAEST: gi|29637258|gb|CB642267.1|CB642267
genomic: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacat ... ctcttttcagGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
EST: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAG GTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGAEST: gi|88477276|gb|CI414547.1|CI414547
genomic: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacat ... ctcttttcagGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
EST: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAG GTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCNTCGCAGCCTAGAGAEST: gi|88556074|gb|CI486380.1|CI486380
genomic: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacat ... ctcttttcagGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
EST: GTCTGAGTTTCTGGATGAGCTCTTCAAAGCTGCCAAG GTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCCCAGCCTAGAGAEST: gi|86887058|gb|CI325873.1|CI325873
genomic: GTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacat ... ctcttttcagGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
EST: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAG GTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGAEST: gi|22304992|gb|BQ906214.1|BQ906214
genomic: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacat ... ctcttttcagGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
EST: CACACCC-ACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAG GTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGAEST: gi|88518587|gb|CI446241.1|CI446241
genomic: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacat ... ctcttttcagGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
EST: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTGTTCAAAGCTGCCAAG GTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
genomic: CACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacat ... ctcttttcagGTTAATGCAGGTGTTCCTCATTCCGTAAATGAGCCCGTCGCAGCCTAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATCAAGTTTGCTGTTCATGCACACCCAACTTTGTCTGAGGTTCTGGATGAGCTCTTCAAAGCTGCCAAGgtatatacattatttgtcattgttgttttgtaattatttgcaccaataatatagtcaactgtacgtgatatgcctcttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC