1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGGAGGCAATGCTTCAGATGCTTCGAAGATGAAAGAGAAGGACGAGACGATCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGgtgaatcttttgttacagttgaatttagaattctgaaacatgcacagaacgtaattcttgctaatataaaactgaaaaactgttagcattatacttgcttgttaacaatttgtggaaactttgaaatgcag
species | Oryza sativa |
transcript | LOC_Os01g12660.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAG GTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAAEST: gi|88242213|gb|CI242062.1|CI242062
genomic: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGgtgaatcttt ... tgaaatgcagGTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAA
EST: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAG GTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAAEST: gi|66917644|gb|CX104492.1|CX104492
genomic: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGgtgaatcttt ... tgaaatgcagGTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAA
EST: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAG GTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAAEST: gi|88265156|gb|CI368930.1|CI368930
genomic: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGgtgaatcttt ... tgaaatgcagGTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAA
EST: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAG GTGGCGGCAATCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAAEST: gi|88504916|gb|CI432422.1|CI432422
genomic: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGgtgaatcttt ... tgaaatgcagGTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAA
EST: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAG GTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAA
genomic: TCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGgtgaatcttt ... tgaaatgcagGTGGCGGCAAGCTTTGCTGCTGAAGGAACAATAATGGGTGAGCTGAAGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAGGCAATGCTTCAGATGCTTCGAAGATGAAAGAGAAGGACGAGACGATCATACTAAGGCCACTAAACATGAAAGATTTGAAAGAAGCAAAAAACCAGgtgaatcttttgttacagttgaatttagaattctgaaacatgcacagaacgtaattcttgctaatataaaactgaaaaactgttagcattatacttgcttgttaacaatttgtggaaactttgaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA