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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGCCACAGCAGGAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttggagtgtccaagagccttgtaaaattgaattcattttagcagcaagctacactgactatcaattgaatatgtaaaagtcttgagattttattatctcgcatatctcttttgtag

Basic information

species Oryza sativa
transcript LOC_Os01g10150.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g10150.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G045259_T02 (Zea mays), 5'ss of exon 14
AAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGCCACAGCAGGAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttg-------------------gagtgtccaagagcctt--gtaaaattgaattcattttagcagcaagctacactgact---atcaattgaatatgtaaaagtcttgagattttattatctcgcatatctcttttgtag----------------------------------
||||||||||||||||||||| ||||||||||||||  |||| ||||| |||||||||||||| || || |||||||| || |||||||||||   |||||||  | ||                    ||||||||  | | |   ||  |||  |||  ||      | |     | | | |     |  |||| || ||   |  |   || || || |  ||| |  |  |  | ||  |                                    
AAACAAAAAGTGGAAGGAGGGCTTCTATGTCACTGCTATGGCAACAGCTGGAAGCCGATGGGCAGTTGTCATGTCCCGCAATGCTGGTTTCACTTCTCAGgtatatgtgttactgtgcccttggtcttaagtgtccacaaccttacagtggaatgaaatagatcggtagatctgctgaaattaatctgaaagaatttaagatcgtatggatatgcgaattgagaatcacaaaagttccattactgaaacactataccgaacgcaccaatttattttgtag

upper sequence: LOC_Os01g10150.1 (Oryza sativa), 5'ss of exon 14
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 14
AAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGCCACAGCAGGAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgta-----cgtttggagtgtccaagagccttgtaaaattgaattcattttagcagc---aagctacactgactatcaattgaatatgtaaa----------agtcttgagattttattatctcgcatatctcttttgtag-----------------------------------
 || || || |||   || || ||||| || ||  |  |||||||||| ||||||||||||| ||| |||||||| || ||||| |||||| |  ||||||||     || |   ||  | |  ||     | |||    |    ||||| ||  |    |     |     ||| || | |||    | |          | | | ||  |  | | |||   |||  |    ||  |                                    
CAATAAGAAATGGCGAGAAGGCTTCTACGTTACATCTATGGCCACAGCGGGAAGCCGATGGGGTGTAGTTATGTCGCGAAACGCAGGTTTCTCTGATCAGgtaattagcgctctaagcctacttgatttacgaaaaccgcatactatttttgcttcttcgactcggagcagatatgaagtaaatgaaaatatttgctgaccaatttagaattcctgtcatcggacatcacctgattacattcctctctcttaccgaatgtatttgccctctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89180204|gb|CI044483.1|CI044483
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|87040610|gb|CI195232.1|CI195232
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|396941388|gb|HO188597.1|HO188597
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|29645032|gb|CB650039.1|CB650039
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88263532|gb|CI367306.1|CI367306
EST:     GAAGCCGATGGGCTGTGGTTATGTCCC-GAACGCT-GTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACCCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88294949|gb|CI522903.1|CI522903
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTANAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|86486164|gb|CI128797.1|CI128797
EST:     TTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: TTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|89184391|gb|CI046956.1|CI046956
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|89166036|gb|CI103126.1|CI103126
EST:     TATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: TATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88437775|gb|CI533732.1|CI533732
EST:     AGCCNATGGGCTGTGGTTATGTCCC-GAANCGCT-GTNTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: AGCCGATGGGCTGTGGTTATGTCCCGGAA-CGCTGGT-TTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|87024182|gb|CI256923.1|CI256923
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|29632066|gb|CB637075.1|CB637075
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTTTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|86526996|gb|CI167202.1|CI167202
EST:     GATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|27546382|gb|CA764550.2|CA764550
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|29688779|gb|CB685054.1|CB685054
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|29626995|gb|CB632006.1|CB632006
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|86600035|gb|CI258375.1|CI258375
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|29670786|gb|CB667061.1|CB667061
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|89193060|gb|CI050358.1|CI050358
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88291104|gb|CI527494.1|CI527494
EST:     GAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|89195193|gb|CI051306.1|CI051306
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|89192726|gb|CI050024.1|CI050024
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|86483807|gb|CI126440.1|CI126440
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88849770|gb|CI001476.1|CI001476
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88513442|gb|CI440948.1|CI440948
EST:     AGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: AGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|86483022|gb|CI125655.1|CI125655
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|58611769|gb|CK039481.1|CK039481
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|89179002|gb|CI043507.1|CI043507
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|3766584|gb|AU030694.1|AU030694
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|89180610|gb|CI044889.1|CI044889
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|86864077|gb|CI332966.1|CI332966
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATC--                         --AGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88271617|gb|CI387670.1|CI387670
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88514991|gb|CI442645.1|CI442645
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|58667425|gb|CK056111.1|CK056111
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|87024232|gb|CI256973.1|CI256973
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88484372|gb|CI421643.1|CI421643
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
EST: gi|88275485|gb|CI395336.1|CI395336
EST:     GAAGCCGATGGGCTGTGGTTATGTCCCGGAACCCTGGTTTCACACATCAG                         GTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG
genomic: GAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGgtacgtttgg ... tcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGG