1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AATATGAAGAATAACAATCCTGATTTGCCTACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattcagaacctctttctcatctaatatgtcccctgttgtatagcagagcactgttttcacgttttagcccccaactaattctttcatgttttctattgcattcttaaatactagtacatgacatgtgtgatgataatctcctttgcaccacgtcttgagcag
species | Oryza sativa |
transcript | LOC_Os01g08970.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GTGGTAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|86480966|gb|CI123599.1|CI123599
genomic: GTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|27578065|gb|CB000760.1|CB000760
genomic: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|88837167|gb|CI078527.1|CI078527
genomic: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: ACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|88955490|gb|CI091582.1|CI091582
genomic: ACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: CGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|29631305|gb|CB636314.1|CB636314
genomic: CGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|86497001|gb|CI139634.1|CI139634
genomic: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|218484541|gb|FG954362.1|FG954362
genomic: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: GAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|89189197|gb|CI048736.1|CI048736
genomic: GAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCGACAGTCTCAAGTCGACAAGAAACGATEST: gi|86480956|gb|CI123589.1|CI123589
genomic: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGATEST: gi|88837509|gb|CI078869.1|CI078869
genomic: TACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
EST: GGAGATGTGGCAAAAGATGACAG GCGAAGAGAAGCAACCTGACATCCAACAGTCTCAAGTCGACAAGAAACGAT
genomic: GGAGATGTGGCAAAAGATGACAGgtaatattca ... tcttgagcagGCGAAGAGAAGCAACCTTACATCCAACAGTCTCAAGTCGACAAGAAACGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATATGAAGAATAACAATCCTGATTTGCCTACAACCGAGATTGCAAAGAAGCTCGGGGAGATGTGGCAAAAGATGACAGgtaatattcagaacctctttctcatctaatatgtcccctgttgtatagcagagcactgttttcacgttttagcccccaactaattctttcatgttttctattgcattcttaaatactagtacatgacatgtgtgatgataatctcctttgcaccacgtcttgagcag
- - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG