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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGTCTGCCCCTCCGCAAGGCGGAGCATGCTTTCTACTTGGACTGGGCTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttcttccatcagactgtcactgtaggctttcaatatcatcaccaatcttctgtaacttaaactgaacaactttctctcgacag

Basic information

species Oryza sativa
transcript LOC_Os12g42884.3
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g42884.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G149751_T06 (Zea mays), 5'ss of exon 10
AGAAGGTCTGCCCCTCCGCAAGGCGGAGCATGCTTTCTACTTGGACTGGGCTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttct------tccatcagactgtcactgtaggctttcaatat-----catcaccaatcttctgtaacttaaactgaacaactttctctcgacag
|||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| || |||||||   | ||||||||||||||||| ||  |  |      | |        | |  ||   |  |   | |      || || || |  | ||  |||  ||    |   | |||| | | |||
AGAAGGGCTGCCGCTCCGCAAGGCTGAGCATGCATTCTACTTGGACTGGGCTGTCCACTCCTTCAGAATTACCAACTGCGAGATCCAGGACACCACCCAGgtcattctcttgaactgtgcgctgtggagcccttgccagtgtgggagaggttcacaccaacatttctttggcactccaaactgatttccttctgttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623205|gb|CB628216.1|CB628216
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|29637651|gb|CB642660.1|CB642660
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|29623204|gb|CB628215.1|CB628215
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|58680942|gb|CK069629.1|CK069629
EST:     CACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|218486860|gb|FG950334.1|FG950334
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|428194|gb|D24342.1|D24342
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|29675800|gb|CB672075.1|CB672075
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|11025872|gb|AU162473.1|AU162473
EST:     CTGTTCACTCTTTCAGAATCACAAAATGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|29615680|gb|CB620692.1|CB620692
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|11564886|gb|AU165522.1|AU165522
EST:     AGAATCACAAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: AGAATCAC-AAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|58587657|gb|CF985965.1|CF985965
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|29620903|gb|CB625914.1|CB625914
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|58689121|gb|CK077808.1|CK077808
EST:     TCAGGACACCACCCAG                         ATTCACACCCACATGTGTTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: TCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|396941330|gb|HO188539.1|HO188539
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|86594958|gb|CI258212.1|CI258212
EST:     GCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: GCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|58585708|gb|CF984016.1|CF984016
EST:     CACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAAGCTTCAACGACATCATCCACTCCAT
genomic: CACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAA-CTTCAACGACATCATCCACTCCAT
EST: gi|29657688|gb|CB653963.1|CB653963
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|10930997|gb|AU161271.1|AU161271
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGTGCTACTCTAACTTCAACGACATCATCCACTCCATC
EST: gi|218501245|gb|FG948195.1|FG948195
EST:     CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAG                         ATTCACACCCACATGT
genomic: CTGTTCACTCCTTCAGAATCACAAACTGCGGTGTTCAGGACACCACCCAGgtaatctttc ... ctctcgacagATTCACACCCACATGT