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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGTTTGGTGCTTTCTTTGCATCTATTCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccgaattttctttcttaagagtccttgcatcgatgaatatatatggccgcaacatgattgtgttcattttatgttctaatctgttttttttggcatatcag

Basic information

species Oryza sativa
transcript LOC_Os12g39420.4
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g39420.4 (Oryza sativa), 5'ss of exon 13
lower sequence: Vv18s0001g11260.t01 (Vitis vinifera), 5'ss of exon 12
GGAAGTTTGGTGCTTTCTTTGCATCTATTCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccgaattttctttcttaagagtccttgcatcgatgaatatatatggccgcaacatg-attgtgttcattttatgttctaatctgttttttttggcatatcag
||||||||||||| ||||||||||||||||| || ||||| || || || || | |||| |  ||||||| |||||||||||||  || |||   ||  |    ||  | |  | | |   || ||||       |   |  | |||||  || | | |  |   |||                  
GGAAGTTTGGTGCCTTCTTTGCATCTATTCCTTTACCAATATTTGCTGCCATATACTGTGTTCTATTTGGCATTGTTGgtgagt--gagtttggctttatttttgttttagtcttgttagtta-atatccttttgatgggtgtagtgttgcttctctttcttttcctgcag---------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29675659|gb|CB671934.1|CB671934
EST:     TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTG                         CTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
genomic: TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccga ... ggcatatcagCTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
EST: gi|218483052|gb|FG951433.1|FG951433
EST:     TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTG                         CTGCGGTGGGAGTCTCGTACATGCAATTTGCAAACCAAAATTCGATGAGGA
genomic: TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccga ... ggcatatcagCTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
EST: gi|218484784|gb|FG964505.1|FG964505
EST:     TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTG                         CTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
genomic: TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccga ... ggcatatcagCTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
EST: gi|218481129|gb|FG959236.1|FG959236
EST:     TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTG                         CTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACCAAAATTCGATGAGGA
genomic: TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccga ... ggcatatcagCTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
EST: gi|454451|gb|D28174.1|D28174
EST:     TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTG                         CTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
genomic: TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccga ... ggcatatcagCTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
EST: gi|29687155|gb|CB683430.1|CB683430
EST:     TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTG                         CTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
genomic: TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccga ... ggcatatcagCTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
EST: gi|7219928|gb|AU065533.2|AU065533
EST:     TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTG                         CTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
genomic: TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccga ... ggcatatcagCTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
EST: gi|218483040|gb|FG956505.1|FG956505
EST:     TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTG                         CTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA
genomic: TCCATTGCCAATCTTCGCAGCAATTTTCTGTATCTTATTTGGTATTGTTGgtgagtccga ... ggcatatcagCTGCGGTGGGAGTCTCGTACATGCAATTTGTAAACAAAAATTCGATGAGGA