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GTTAAAGAAGTCATAATTTCTTACTATATCTTAATGGAACAGGGGAAGGCAACTGAACAAgtaagcatgctaaccagtactccctccgtcccaaaatataagagattttgggtggatgtgacatatcctagtatgtctagattcattgtactaggatgtg...
species | Oryza sativa |
transcript | LOC_Os12g29550.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GAAGGCAACTGAACAA GATCTGGATTTGCGCTGTGAAGAGCTAATTAAGGAAGAGTTTGGTGCAGAGEST: gi|29646633|gb|CB651640.1|CB651640
genomic: GAAGGCAACTGAACAAgtaagcatgc ... tgccttgcagGATCTGGATTTGCGCTGTGAAGAGCTAATTAAGGAAGAGTTTGGTGCAGAG
EST: TCATAATTTCTTACTATATCTTAATGGAACAGGGGAAGGCAACTGAACAA GATTTGGATTTGCGCTGTGAAGAGCTAATTAAGGAAGAGTTTGGTGCAGAGEST: gi|29666115|gb|CB662390.1|CB662390
genomic: TCATAATTTCTTACTATATCTTAATGGAACAGGGGAAGGCAACTGAACAAgtaagcatgc ... tgccttgcagGATCTGGATTTGCGCTGTGAAGAGCTAATTAAGGAAGAGTTTGGTGCAGAG
EST: TCATAATTTCTTACTATATCTTAATGGAACAGGGGAAGGCAACTGAACAA GATCTGGATTTGCGCTGTGAAGAGCTAATTAAGGAAGAGTTTGGTGCAGAGEST: gi|58595569|gb|CK006097.1|CK006097
genomic: TCATAATTTCTTACTATATCTTAATGGAACAGGGGAAGGCAACTGAACAAgtaagcatgc ... tgccttgcagGATCTGGATTTGCGCTGTGAAGAGCTAATTAAGGAAGAGTTTGGTGCAGAG
EST: TCATAATTTCTTACTATATCTTAATGGAACAGGGGAAGGCAACTGAACAA GATCTGGATTTGCGCTGTGAAGAGCTAATTAAGGAAGAGTTTGGTGCAGAG
genomic: TCATAATTTCTTACTATATCTTAATGGAACAGGGGAAGGCAACTGAACAAgtaagcatgc ... tgccttgcagGATCTGGATTTGCGCTGTGAAGAGCTAATTAAGGAAGAGTTTGGTGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTAAAGAAGTCATAATTTCTTACTATATCTTAATGGAACAGGGGAAGGCAACTGAACAAgtaagcatgctaaccagtactccctccgtcccaaaatataagagattttgggtggatgtgacatatcctagtatgtctagattcattgtactaggatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgtccc