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ACCCTTCAAATTGCTCATCCCCGGCAGCCGTGAGCACAGTGAGGAAGCAGATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtcttgatctcttcgatgcccaataacacaccagtaataacaacacggaaaagataggactgtgcagcgattgtggcctgcctttcttgcacat...
species | Oryza sativa |
transcript | LOC_Os10g36780.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACACEST: gi|88198073|gb|CI197923.1|CI197923
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACACEST: gi|157649959|gb|EX449593.1|EX449593
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATACCAAAAACCAACAAG GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACACEST: gi|88263249|gb|CI367023.1|CI367023
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACACEST: gi|86904683|gb|CI321591.1|CI321591
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACACEST: gi|88968629|gb|CI098843.1|CI098843
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACACEST: gi|88511080|gb|CI438586.1|CI438586
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
EST: ATCNCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG GGCATGGTGATGATGACTCGGGAGTCGGGGGGTACAATAAACACAGTTACAEST: gi|88519380|gb|CI447034.1|CI447034
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTC-GGGGCTACAATAAACACAGTTACA
EST: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAG GGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
genomic: ATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtct ... ctgaacgcagGGCATGGTGATGATGACTCGGGAGTCGGGGCTACAATAAACACAGTTACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCTTCAAATTGCTCATCCCCGGCAGCCGTGAGCACAGTGAGGAAGCAGATCGCCAGCCACATCAGCTTGTGGCTATCACAATGCCAAGAACCAACAAGgtcagggtcttgatctcttcgatgcccaataacacaccagtaataacaacacggaaaagataggactgtgcagcgattgtggcctgcctttcttgcacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC