1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttggctgtccagctattatactattgaactatagtgattgcaaaaaaaaaaaagaaagttataactaatacatccatattagttgttctgagcttctgcttttctcgatcactctgacttcgtgacaaacacatttgcagttcacttcaaattcaattttggtcaatgacatctttgctctacctaatctcag
species | Oryza sativa |
transcript | LOC_Os10g36760.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|3762110|gb|C99358.1|C99358
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|88459544|gb|CI519605.1|CI519605
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: TATGGTTATCAGAATGTCAAGAGCAAG AACACGACAATGAGCCATTGCTGGGCATTAGATGGAGCATAGCTACTTACTEST: gi|88471937|gb|CI409208.1|CI409208
genomic: TATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: CAGATGGTCGATCACATTGATTTATGGTTATCAGAATGTCAGGACCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGGTACTTACTEST: gi|86509840|gb|CI152473.1|CI152473
genomic: CAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|88255907|gb|CI354731.1|CI354731
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|88445264|gb|CI552317.1|CI552317
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|89173586|gb|CI041479.1|CI041479
genomic: GATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|89181004|gb|CI045087.1|CI045087
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|3768110|gb|AU032137.1|AU032137
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|87028775|gb|CI349494.1|CI349494
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: ATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGGTACTTACTEST: gi|86842145|gb|CI338486.1|CI338486
genomic: ATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACAGTGATTTATGGGTATCAGGAGGTCAAGAGCAAG GACACGACAAGGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|29667886|gb|CB664161.1|CB664161
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|89176609|gb|CI111325.1|CI111325
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|87030148|gb|CI111844.1|CI111844
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|89174046|gb|CI041939.1|CI041939
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|88463972|gb|CI529509.1|CI529509
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: ATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|88264971|gb|CI368745.1|CI368745
genomic: ATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCACAATGTCAAGACCAAG GACACGACAATGAGCCATTGCTGGGCACTAGATGGAGCATAGCTACTTACTEST: gi|88220720|gb|CI220280.1|CI220280
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|86434153|gb|CI094496.1|CI094496
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|89162466|gb|CI099158.1|CI099158
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|87031114|gb|CI259694.1|CI259694
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|18386498|gb|BM419696.1|BM419696
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCCAGTAGATGGAGCATAGCTACTTACEST: gi|29678500|gb|CB674775.1|CB674775
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGG-CAGTAGATGGAGCATAGCTACTTAC
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|86260495|gb|CI066368.1|CI066368
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACTEST: gi|88976203|gb|CI024420.1|CI024420
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
EST: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAG GACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
genomic: GCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttg ... ctaatctcagGACACGACAATGAGCCATTGCTGGGCAGTAGATGGAGCATAGCTACTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGACTCGTCTAATTGTTCATCTCCAGAAGCTGTGAACAAAGTAAGAAAGCAGATCGTCGATCACATTGATTTATGGTTATCAGAATGTCAAGAGCAAGgttggttttggctgtccagctattatactattgaactatagtgattgcaaaaaaaaaaaagaaagttataactaatacatccatattagttgttctgagcttctgcttttctcgatcactctgacttcgtgacaaacacatttgcagttcacttcaaattcaattttggtcaatgacatctttgctctacctaatctcag
- - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG