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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCAAGGCTATGAAAGAATCCGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacctcacccattaatatttacttctaggatacccaaacataaatgcctgatatttatatttttcttattacag

Basic information

species Oryza sativa
transcript LOC_Os10g35960.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g35960.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G085747_T01 (Zea mays), 5'ss of exon 13
GTTCTCAAGGCTATGAAAGAATCCGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacctcacccattaatatttacttctaggatacccaaacataaatgcctgatatttatatttttcttattacag----------------------------------------------------------
|||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||  |   | ||  ||   | |  || ||  |||||||||     | ||   ||    | | |  ||||||| |                                                               
GTTCTCAAAGCTATGAAAGAATCCGATTCCCCTCGGCCTGCAGTTTTTGCAATGTCCAACCCTACTACTAAAGgtttgtg--cacagacacctacagatagtttgaggataccctgtggtgaaatgctatcttcttttcttttcttttcttttctttgaggggaacccaatgataaaacactaattttgatctctttttattacatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58596497|gb|CK007025.1|CK007025
EST:     CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG                         CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
EST: gi|58601869|gb|CK012397.1|CK012397
EST:     CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAAGCCAACTACTAAAG                         CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGT
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGT
EST: gi|29664102|gb|CB660377.1|CB660377
EST:     CGATTCCCCTGGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG                         CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
EST: gi|29615205|gb|CB620218.1|CB620218
EST:     CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG                         CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
EST: gi|29671881|gb|CB668156.1|CB668156
EST:     CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG                         CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
EST: gi|29662805|gb|CB659080.1|CB659080
EST:     CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG                         CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
EST: gi|25799623|gb|CA755584.1|CA755584
EST:     CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAG                         CCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT
genomic: CGATTCCCCTCGTCCTGCAATTTTTGCAATGTCCAACCCAACTACTAAAGgttcctcacc ... cttattacagCCGAATGTACTCCTGAAGATGTATTCAAATATGTTGGAGACAATGCAGTAT