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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTAGAAGTTGTCCGTCTTGAAGGACAAGCACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGgtaataattctcttctttcggcgctatctggttttcaaaagagcactattaccaatcgcagtaaaaaagagcaaattattctaataattaagtcccgttgcaaggaattcctaatgtacctcccatcttgcctgatctttcag

Basic information

species Oryza sativa
transcript LOC_Os10g33960.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g33960.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G469551_T01 (Zea mays), 5'ss of exon 14
ATTTTAGAAGTTGTCCGTCTTGAAGGACAAGCACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGgtaataattctcttctttcggcgctatctggttttcaaaag-agcactattaccaatcgcagtaaaaaagagcaa-attattctaataattaagtcccgttgcaaggaattcctaatgtacctcccatcttgcctgatctttcag
|| ||||||||||| ||||||||||||||  | ||||||||||| || || ||| ||||||||||||| || |||||||||||||||||  |  |||    || || |  ||||||||   | ||   |  | |   |     || |||  |   | |  || || ||| ||||  |   | |  |                                        
ATCTTAGAAGTTGTTCGTCTTGAAGGACAGACTCTTACACATGACGAGGGCCTTTTGTCTAGAGATATACATCTGCTTCAGgtaataataataatct----gctctgtagggttttcacgtgcagtcttcctgctggtt-tgctacaaatcattgataacatacttatagttaaaacaaatcgtta----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29626563|gb|CB631574.1|CB631574
EST:     CACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAG                         CTTTGCACTGGAATAGATGAGACATCAATGGGATCCTGCTTCCAGCTTGTC
genomic: CACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGgtaataattc ... gatctttcagCTTTGCACTGGAATAGATGAGAAATCAATGGGATCCTGCTTCCAGCTTGTC
EST: gi|87017425|gb|CI287965.1|CI287965
EST:     CACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAG                         CTTTGCACTGGAATAGATGAGAAATCAATGGGATCCTGCTTCCAGCTTGTC
genomic: CACTTACACATGATGATGGTCTTATGTCTAGAGATATTCACCTGCTTCAGgtaataattc ... gatctttcagCTTTGCACTGGAATAGATGAGAAATCAATGGGATCCTGCTTCCAGCTTGTC