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GCTGGAGATGCATCATATGCTTCATACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGgtataccaggattccaattctcttatactgctaaatgatatctgggaacaaattgtagaattgtttttttcttgatggcag
species | Oryza sativa |
transcript | LOC_Os10g25130.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAG GCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACTEST: gi|38481162|gb|CF965251.1|CF965251
genomic: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGgtataccagg ... ttgatggcagGCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACT
EST: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAG GCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACTEST: gi|29666343|gb|CB662618.1|CB662618
genomic: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGgtataccagg ... ttgatggcagGCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACT
EST: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAG GCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACTEST: gi|29666342|gb|CB662617.1|CB662617
genomic: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGgtataccagg ... ttgatggcagGCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACT
EST: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAG GCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACTEST: gi|88980800|gb|CI022494.1|CI022494
genomic: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGgtataccagg ... ttgatggcagGCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACT
EST: CGCCGTGCAAAG GCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACTEST: gi|13165185|gb|AU173982.1|AU173982
genomic: CGCCGTGCAAAGgtataccagg ... ttgatggcagGCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACT
EST: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAG GCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACT
genomic: ACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGgtataccagg ... ttgatggcagGCATTGGAGAATGCTTTCAACAGTCTTGAGGGAATTACATGCAACAAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGGAGATGCATCATATGCTTCATACAAGGCAGAGAAAGATGGAATCCTCCAATCATTAGCTCGCCGTGCAAAGgtataccaggattccaattctcttatactgctaaatgatatctgggaacaaattgtagaattgtttttttcttgatggcag
- - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG