1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGgtaaaactcaaatcattttgctccaacaaacatatatattttcaattgtaaagaaatttatggtcttacttaaaaaaggaaacttaagttctgaatggattggttcttttcttgagtatccaagatgttacacaacatatggcttaccatatttttcatgtttccaaataaatctcaatag
species | Oryza sativa |
transcript | LOC_Os10g25090.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAG GCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGEST: gi|2317518|gb|C22572.1|C22572
genomic: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGgtaaaactca ... atctcaatagGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGG
EST: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAG GCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGEST: gi|87004671|gb|CI300993.1|CI300993
genomic: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGgtaaaactca ... atctcaatagGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGG
EST: CTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAG GCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGEST: gi|86497623|gb|CI140256.1|CI140256
genomic: CTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGgtaaaactca ... atctcaatagGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGG
EST: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAG GCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGEST: gi|2317454|gb|C22508.1|C22508
genomic: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGgtaaaactca ... atctcaatagGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGG
EST: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAG GCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGGEST: gi|2317497|gb|C22551.1|C22551
genomic: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGgtaaaactca ... atctcaatagGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGG
EST: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAG GCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGG
genomic: ATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGgtaaaactca ... atctcaatagGCTTCAGATCAGGGTTCTGGATATAGTGCCCCTGAAGTTGACATGACTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGAACTTCAAGTCATCTAATATCTTGCTGGACACCGAGTTCAATCCTCATGTTTCTGATGCTGGACTTGCCAGCAGTGTTCCTGATTCTGAATTCCAGgtaaaactcaaatcattttgctccaacaaacatatatattttcaattgtaaagaaatttatggtcttacttaaaaaaggaaacttaagttctgaatggattggttcttttcttgagtatccaagatgttacacaacatatggcttaccatatttttcatgtttccaaataaatctcaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA