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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAGAGACTTGCAGATGTAAAGGGTATAACCATCACTGCTGATGGGACAGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctctctctctctctgatacatggtttcaatagttcatacagtacaacttgtataaattcactattgtgcttaacagctcaatatatgtaaaattatccatgctttccactctgtctgggattcatattcttatgctattagctcaattgtatttggtactcaaaacatatgtcgtggtgttccacag

Basic information

species Oryza sativa
transcript LOC_Os09g34910.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g34910.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G149520_T02 (Zea mays), 5'ss of exon 13
GAAGAGAGACTTGCAGATGTAAAGGGTATAACCATCACTGCTGATGGGACAGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctctctctctctctgatacatggtttcaatagttcatacagtacaacttgtataaattcactattgtgct-taacagctcaatatatgtaaa-attatccatgctttccactctgtctgggattcatattcttatgctattagctcaattgtatttggtactcaaaacatatgtcgtggtgttccacag
||||| | |||||||||||||||||||   ||| |||| |||||||| ||||| | |||||||||||||||| ||||||| |||||||| || ||||||||||||    ||  || ||    | | ||     ||||||| ||  | ||  |   | || ||   | | |  || | |  |  || |||   | |     |||| ||                                                                                        
GAAGATAAACTTGCAGATGTAAAGGGTGCCACCCTCACCGCTGATGGAACAGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggtccttccctt--gttcgtga----aatagtt-atcaactagcataggcatgaaaatattttcctgatgtggcccctgaatccgttttcttgttatgca----------------------------------------------------------------------------------------

upper sequence: LOC_Os09g34910.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G164956_T01 (Zea mays), 5'ss of exon 13
GAAGAGAGACTTGCAGATGTAAAGGGTATAACCATCACTGCTGATGGGACAGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtata-----cctctctctctctctgatacat---ggtttcaatagttcatacagtacaacttgtataaattcactattgtgcttaacagctcaatatatgtaaaattatccatgctttccactctgtctgggattcatattcttatgctattagctcaattgtatttggtactcaaaaca-tatgt-cgtggt--gttccacag
||||||| |||||||||||||||||||  |||| |||| |||||||| || || | |||||||||||||||| ||||||| |||||||| || ||||||||||||     |||     | |   ||| | |     |  | || |  |  ||| |     ||  ||  ||| | || |  || |   ||  |||| ||| |  |  | |    |   | ||| |   |||   || | |  | | ||    ||    ||  ||        |||| ||||| ||  | | || |   | |  |||
GAAGAGAAACTTGCAGATGTAAAGGGTGCAACCCTCACGGCTGATGGAACGGGGGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggaccttctcttgttcgtgaaataattaagcatgaaaatattttactgatgtgctctta-gaatcctctctcttgttatgcaattcaa-ataaggcagctgaggtgtcggtaccattt--tctaaaatccgt-ctatgataacttttctgcatatg-gggcaccactctaaacactacatacatgatcgatcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88955368|gb|CI091460.1|CI091460
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29679594|gb|CB675869.1|CB675869
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88989220|gb|CI042333.1|CI042333
EST:     TTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: TTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29622801|gb|CB627812.1|CB627812
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89167538|gb|CI108939.1|CI108939
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29637933|gb|CB642942.1|CB642942
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88837446|gb|CI078806.1|CI078806
EST:     ATGTTCCTTCAGCAGAGGTTGAAGACAATATTCAAG                         GTGCACAGAACGCTGCCAAGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: ATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88831285|gb|CI082095.1|CI082095
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88839408|gb|CI005196.1|CI005196
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88836454|gb|CI078351.1|CI078351
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88964179|gb|CI045372.1|CI045372
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|86488199|gb|CI130832.1|CI130832
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88241370|gb|CI241219.1|CI241219
EST:     AGGTGCTGTATGTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88964243|gb|CI045436.1|CI045436
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|218486017|gb|FG967018.1|FG967018
EST:     AGGTGCTGTATTTGATGTTCCTTCAACAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGG
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGG
EST: gi|86508845|gb|CI151478.1|CI151478
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88997545|gb|CI390211.1|CI390211
EST:     CTTCAGCAGAGGTTGAAGACTATATTCAAGG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTCCCA
genomic: CTTCAGCAGAGGTTGAAGACTATATTCAA-Ggtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCA
EST: gi|89182627|gb|CI113996.1|CI113996
EST:     TATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: TATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88850102|gb|CI091397.1|CI091397
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|86488526|gb|CI131159.1|CI131159
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29628389|gb|CB633400.1|CB633400
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|86255235|gb|CI062140.1|CI062140
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88241363|gb|CI241212.1|CI241212
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89197228|gb|CI051958.1|CI051958
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89198678|gb|CI016763.1|CI016763
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89173510|gb|CI041403.1|CI041403
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88243642|gb|CI244039.1|CI244039
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88903983|gb|CI006216.1|CI006216
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89173819|gb|CI041712.1|CI041712
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88265228|gb|CI369002.1|CI369002
EST:     TGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCA
genomic: TGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCT-GCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCA
EST: gi|88845347|gb|CI084272.1|CI084272
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|86420902|gb|CI056891.1|CI056891
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89197091|gb|CI021931.1|CI021931
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88989423|gb|CI043894.1|CI043894
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|87008347|gb|CI301105.1|CI301105
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTG
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTG
EST: gi|87019448|gb|CI281949.1|CI281949
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88264631|gb|CI368405.1|CI368405
EST:     AGGTTGAAGACTATATTCAA-                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89185742|gb|CI047611.1|CI047611
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACCATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|218504157|gb|FG948763.1|FG948763
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|86435691|gb|CI106924.1|CI106924
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88215121|gb|CI214970.1|CI214970
EST:     AGGTGCTGTATGTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89175488|gb|CI042509.1|CI042509
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|86872244|gb|CI323694.1|CI323694
EST:     CTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTCCCATGGTGACTGTCGAGGAAGTGAAACAATTTCCAC
genomic: CTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|87035352|gb|CI189974.1|CI189974
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29636722|gb|CB641731.1|CB641731
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29687238|gb|CB683513.1|CB683513
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88903465|gb|CI089003.1|CI089003
EST:     TTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: TTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29662539|gb|CB658814.1|CB658814
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|426929|gb|D23005.1|D23005
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88234152|gb|CI234001.1|CI234001
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|89179856|gb|CI044135.1|CI044135
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|86417619|gb|CI031828.1|CI031828
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|218495874|gb|FG947056.1|FG947056
EST:     CGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTTGCACAGAACGCTGCCATGGTGACTGT
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGT-GCACAGAACGCTGCCATGGTGACTGT
EST: gi|89174981|gb|CI041059.1|CI041059
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|88840501|gb|CI079955.1|CI079955
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29662538|gb|CB658813.1|CB658813
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|29672113|gb|CB668388.1|CB668388
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
EST: gi|86482307|gb|CI124940.1|CI124940
EST:     AGGTGCTGTATTTGATGTTCCTTCAGCAGAGTTTGAAGACTATATTCAAG                         GTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC
genomic: AGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 49

GAAGAGAGACTTGCAGATGTAAAGGGTATAACCATCACTGCTGATGGGACAGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctct ... tgttccacagGTGCACAGAACGCTGCCATGGTGACTGTCGAGGAAGTGAAACAATTGCCACCCTTGCAAGAGAGGGAACAGTCTGGTGGCAGCCGAGGTGGAGGAAGGTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAAGAGAGACTTGCAGATGTAAAGGGTATAACCATCACTGCTGATGGGACAGGTGCTGTATTTGATGTTCCTTCAGCAGAGGTTGAAGACTATATTCAAGgtatacctctctctctctctgatacatggtttcaatagttcatacagtacaacttgtataaattcactattgtgcttaacagctcaatatatgtaaaattatccatgctttccactctgtctgggattcatattcttatgctattagctcaattgtatttggtactcaaaacatatgtcgtggtgttccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA