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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGGAGAATTAAAATATCAAAGAATCCATCCAGTAGTGGCTGCCCCAAAGATACCAGGGAGGTTTTATTTCATCTTTGGGAAGCCAATTGAAACAAGAGgtacatctctaaagaactacgcaagtaaatctccaattaatatacctgtcgcacgcactgtctcatgacaagttaaacacgcttactttcttttggcaatctgaagataagctactaggctagaacacatgaagtgatgaagatgtttttccgagacctgatttttgcttgttttcatag

Basic information

species Oryza sativa
transcript LOC_Os09g33530.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g33530.1 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM5G817559_T01 (Zea mays), 5'ss of exon 12
ACCGGAGAATTAAAATATCAAAGAATCCATCCAGTAGTGGCTGCCCCAAAGATACCAGGGAGGTTTTATTTCATCTTTGGGAAGCCAATTGAAACAAGAGgtacatctctaaaga-actacgcaagtaaatctccaattaatatacctgtcgcacgcactgtctcatgacaagttaaacacgcttactttcttttggcaatctgaagataagctactaggctagaacaca-tgaagtgatgaagatgtttttccgagacctgatttttgcttgttttca-tag
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ATGGGAGAGGTAAAAGACCAAAGAATGCACCCCCTACTGCTCGCTCCCAAGGTACCAGGGCGGTTTTACTTCGTCTTTGGGAAGCCTATCGAAACAAGAGgtacgggttcagaaacatttcgttacatcatatctcagcagtctgtgctcttcaggcgttctctcggtgtcagcttt-tatgttggataccgacgcatgcgcatgcgtttgaccgtt--tctcgaacctggtgttgggttgaaaa--------caaatcattcgctttgcttgcttgcaatag