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CAAGGTTGTTGCCACATGTGGTGGCAAATGTAAAGCTGCACTTCTGTCTTCCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGATgtaagcttgctcaaacttcacttttaatatctctacacttagaattgatttttttcatactgaatactttgtgttttatgtttctaagcttggtagcatc...
species | Oryza sativa |
transcript | LOC_Os09g28570.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGAT GTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTTEST: gi|29670808|gb|CB667083.1|CB667083
genomic: CCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGATgtaagcttgc ... ctgattccagGTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTT
EST: CCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGAT GTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTTEST: gi|66913912|gb|CX100760.1|CX100760
genomic: CCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGATgtaagcttgc ... ctgattccagGTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTT
EST: CCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGAT GTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTTEST: gi|3766964|gb|AU031074.1|AU031074
genomic: CCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGATgtaagcttgc ... ctgattccagGTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTT
EST: CCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGAT GTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTTEST: gi|29675620|gb|CB671895.1|CB671895
genomic: CCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGATgtaagcttgc ... ctgattccagGTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTT
EST: ATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGAT GTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTT
genomic: ATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGATgtaagcttgc ... ctgattccagGTTCTGAAAAAAGAGTTTCCAAGAGGAGCAGATATCATATATGAATCGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGTTGTTGCCACATGTGGTGGCAAATGTAAAGCTGCACTTCTGTCTTCCTTAGGAGTTGATAGAGTTATCAACTACCAAAATGAAAAGATCAAAGATgtaagcttgctcaaacttcacttttaatatctctacacttagaattgatttttttcatactgaatactttgtgttttatgtttctaagcttggtagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA