1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTTGGTGTCTCCCTCTTTCTTGGCTTATCAATACCAGAGTACTTTTCTCGGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGGgttcgtacttatatactctctaacatttcaatttccatttggaatgaacagcatacgaaaatgaatctatatctagtacattgcggtaacacaatgctaa...
species | Oryza sativa |
transcript | LOC_Os09g15170.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CAGCGCACACTAAGGCTGGATGG TTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCEST: gi|88991286|gb|CI108673.1|CI108673
genomic: CAGCGCACACTAAGGCTGGATGGgttcgtactt ... ttgtgtgcagTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTC
EST: GGACCAGCGCACACTAAGGCTGGATGG TTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCEST: gi|87019213|gb|CI277929.1|CI277929
genomic: GGACCAGCGCACACTAAGGCTGGATGGgttcgtactt ... ttgtgtgcagTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTC
EST: GGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGG TTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCEST: gi|58676289|gb|CK064976.1|CK064976
genomic: GGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGGgttcgtactt ... ttgtgtgcagTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTC
EST: GGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGG TTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCEST: gi|112785328|gb|EE590478.1|EE590478
genomic: GGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGGgttcgtactt ... ttgtgtgcagTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTC
EST: GGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGG TTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCEST: gi|58679435|gb|CK068122.1|CK068122
genomic: GGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGGgttcgtactt ... ttgtgtgcagTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTC
EST: GGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGG TTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTCEST: gi|27577161|gb|CA999855.1|CA999855
genomic: GGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGGgttcgtactt ... ttgtgtgcagTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTC
EST: CAGCGCACACTAAGGCTGGATGG TTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTC
genomic: CAGCGCACACTAAGGCTGGATGGgttcgtactt ... ttgtgtgcagTTCAATGACTACATCAACAGCGTCTTCTCGTCTCCACCGACTGTCGCCCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGGTGTCTCCCTCTTTCTTGGCTTATCAATACCAGAGTACTTTTCTCGGTATACCACGAGCGCACAACAAGGACCAGCGCACACTAAGGCTGGATGGgttcgtacttatatactctctaacatttcaatttccatttggaatgaacagcatacgaaaatgaatctatatctagtacattgcggtaacacaatgctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA