1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgcaatacatctttcttttctactcgagaaatagcttactgagacctgtcatttttgggtcaggtgctaactggtaacagtgacattgcag
species | Oryza sativa |
transcript | LOC_Os09g07830.3 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATTEST: gi|42592163|gb|CK738649.1|CK738649
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATTEST: gi|42592163|gb|CK738649.1|CK738649
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATTEST: gi|42592163|gb|CK738649.1|CK738649
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATTEST: gi|42592163|gb|CK738649.1|CK738649
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTTGACATTEST: gi|88265504|gb|CI376406.1|CI376406
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAG-C-----C-TTgtaaggcgca ... gaca
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88278180|gb|CI399180.1|CI399180
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88270104|gb|CI381402.1|CI381402
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88462858|gb|CI519770.1|CI519770
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88959704|gb|CI002314.1|CI002314
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88291122|gb|CI527512.1|CI527512
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|86536502|gb|CI176708.1|CI176708
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88273759|gb|CI394165.1|CI394165
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|86537651|gb|CI177857.1|CI177857
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88975140|gb|CI023391.1|CI023391
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88522268|gb|CI450014.1|CI450014
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88267020|gb|CI378955.1|CI378955
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88468140|gb|CI517599.1|CI517599
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88267537|gb|CI379472.1|CI379472
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT CTGATCCATCTCCAGTTCTCCAGGACGGTTTGTGTACTCTAGTTTATTTGAEST: gi|89198029|gb|CI117507.1|CI117507
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACG-TTTGTGTACTCTAGTTTATTTGA
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGATEST: gi|88295383|gb|CI527746.1|CI527746
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
EST: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTT GTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
genomic: GGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgca ... gacattgcagGTGATCCATCTCCAGTTCTCCAGGACGTTTGTGTACTCTAGTTTATTTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTAGGGAGAAAGGTGGCAAAATCGGAGTTGCTGGTGTTTGCAATGGCGGAGGCGGAGCATCTGCTCTCGTTCTCGAGCTTGCATAAGAAGCCTTgtaaggcgcaatacatctttcttttctactcgagaaatagcttactgagacctgtcatttttgggtcaggtgctaactggtaacagtgacattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC