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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTCCCTTGTGCAACAAATCATTATCCAACAAACTGCTCTATTTTTCAATCGGCACATCGATCAGATTATACTATGCAGCATATATGGAGTTGCTAAGgtctgtctagaaattactccccttgcaacaaagaaagatttcgcttgttatgattgctagtatatctatcaattgctgtttttccagatatctcagttagcactcagttttgtttattggtccatgtgtgcag

Basic information

species Oryza sativa
transcript LOC_Os08g42600.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G016997_T01 (Zea mays), 5'ss of exon 13
GTACTCCCTTGTGCAACAAATCATTATCCAACAAACTGCTCTATTTTTCAATCGGCACATCGATCAGATTATACTATGCAGCATATATGGAGTTGCTAAGgtctgtctagaaattactccccttgcaacaaagaaagatttcgcttgttatgattgctagtatatctatcaattgctgttttt-ccagatatctcagttagcactcagttttgtttattggtccatgtgtgcag
 || |||||||| || |||||| ||| |||||| |||| ||| || |||||  ||||||| |||||||| |||||||||||||||||||||||||| |||||   ||      ||||      |  ||    |    | ||  ||| |  | | || ||  | | ||||    | ||||  |    | || ||| | ||  ||   | ||                        
ATATTCCCTTGTCCAGCAAATCCTTAGCCAACAGACTGGTCTCTTCTTCAACAGGCACATTGATCAGATCATACTATGCAGCATATATGGAGTTGCCAAGgtacatcc-----ttaca-----tataattttgtcgaagtt--cttatattaactgata--aaaactatttcctactgtgatcattaaatttctta-ttgacaacaatttgcag--------------------

upper sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G033828_T02 (Zea mays), 5'ss of exon 14
GTACTCCCTTGTGCAACAAATCATTATCCAACAAACTGCTCTATTTTTCAATCGGCACATCGATCAGATTATACTATGCAGCATATATGGAGTTGCTAAGgtctgtc--tagaaattactccccttgcaacaaagaaagatttcgcttgttatgattgctagtatatctatcaattgctgtttttccagatatct-cagttagcactcagttttgtttattggtccatgtgtgcag
||| ||||||||||| |||||| ||| |||||| ||||  || || |||||  ||||||| || ||||| |||||||||||||||||||||||||| ||||| | ||  || | || | ||     |      |         || |    ||  || ||| ||| |  || || | |  | ||  || |   |  |||                                     
GTATTCCCTTGTGCAGCAAATCCTTAGCCAACAGACTGGCCTTTTCTTCAACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAGgtatatccttacatataaatctgtcggagttccaatttttaaccgatacaaatatttcctactatgttcattaaataccttgttgacaaaaccccgcag-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58675166|gb|CK063853.1|CK063853
EST:     ATCGGCACATCGATCAGATTATACTATGCAGCATATATGGAGTTGCTAAG                         ATATCTCAATTGGCACTGACATTCAAGGAAATTATTTTCGGCTACAGAAAA
genomic: ATCGGCACATCGATCAGATTATACTATGCAGCATATATGGAGTTGCTAAGgtctgtctag ... atgtgtgcagATATCTCAATTGGCACTGACATTCAAGGAAATTATTTTCGGCTACAGAAAA