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TTTCTCTGGAAATGGTCACACACAAAGCCCTAACATCAACGGCAACACTGAAGTCCCGGTTAACCCTAACATAGAATCTGTCAAATGGTTCTTCAAGGAAgtatgtggctcatcactaaattctatatccttcaaaattatcttttcatatagtagagctggaaatcatgtgaaatttattgacag
species | Oryza sativa |
transcript | LOC_Os08g30740.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: CATAGAATCTGTCAAATGGTTCTTCAAGGAA CGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTCEST: gi|29640977|gb|CB645984.1|CB645984
genomic: CATAGAATCTGTCAAATGGTTCTTCAAGGAAgtatgtggct ... ttattgacagCGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTC
EST: AAGTCCCGGTTAACCCTAACATAGAATCTGTCAAATGGTTCTTCAAGGAA CGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTCEST: gi|29640976|gb|CB645983.1|CB645983
genomic: AAGTCCCGGTTAACCCTAACATAGAATCTGTCAAATGGTTCTTCAAGGAAgtatgtggct ... ttattgacagCGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTC
EST: AAGTCCCGGTTAACCCTAACATAGAATCTGTCAAATGGTTCTTCAAGGAA CGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTCEST: gi|33793662|gb|CF322715.1|CF322715
genomic: AAGTCCCGGTTAACCCTAACATAGAATCTGTCAAATGGTTCTTCAAGGAAgtatgtggct ... ttattgacagCGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTC
EST: AAGTCCCGGTTAACCCTAACATAGAATCTGTCAAATGGTTCTTCAAGGAA CGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTC
genomic: AAGTCCCGGTTAACCCTAACATAGAATCTGTCAAATGGTTCTTCAAGGAAgtatgtggct ... ttattgacagCGGCTTGATGTGGACCCAAAAGAGGAGAGCAGGACATTCTTAACGTTCGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTCTGGAAATGGTCACACACAAAGCCCTAACATCAACGGCAACACTGAAGTCCCGGTTAACCCTAACATAGAATCTGTCAAATGGTTCTTCAAGGAAgtatgtggctcatcactaaattctatatccttcaaaattatcttttcatatagtagagctggaaatcatgtgaaatttattgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA