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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctcaaatctctaacttctattcttgttcacagtggagactgtgaatctacaatttcttcttccatgcaaagatttcttctaatatcctagtga...

Basic information

species Oryza sativa
transcript LOC_Os08g22864.2
intron # 13
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58695402|gb|CK084089.1|CK084089
EST:     GCTTCCGCAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: GCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
EST: gi|58669478|gb|CK058164.1|CK058164
EST:     TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
EST: gi|58691060|gb|CK079747.1|CK079747
EST:     TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
EST: gi|58677228|gb|CK065915.1|CK065915
EST:     TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
EST: gi|58654931|gb|CK043611.1|CK043611
EST:     TTATGAATAAAATTGGACTGATGCTTCCGCGAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: TTATGAATAAAATTGGACTGATGCTTCCGC-AGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
EST: gi|29665535|gb|CB661810.1|CB661810
EST:     TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
EST: gi|218502076|gb|FG960994.1|FG960994
EST:     TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
EST: gi|58610277|gb|CK038129.1|CK038129
EST:     TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT
EST: gi|58672488|gb|CK061174.1|CK061174
EST:     TTTATGAATAAAA-TGGACTGATGCTTCCGCAGAAATATTGGCAACTTGG                         GAATGATGGGCTATTGGC-TTTGTGAACAACTTCTTGAAGGAGCACTTCTT
genomic: TTTATGAATAAAATTGGACTGATGCTTCCGCAGAAATATTGGCAACTTGGgtaatgcctc ... atttctgtagGAATGATGGGCTATTGGCTTTTGTGAACAACTTCTTGAAGGAGCACTTCTT