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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGgtgagtcatcttactgcaacctatgcctaacgcaaagcgtcctcttttcatccaagtttgtgccacatgtctgaattctcaccctaaacaggacctcagc...

Basic information

species Oryza sativa
transcript LOC_Os07g47100.2
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G027851_T02 (Zea mays), 5'ss of exon 12
TTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGgtgagtcatcttactgcaacctatgcctaacgcaaagcgtcctcttttcatccaagtttgtgccacatgtctgaattctcaccctaa-acaggacctcagc-------
|| || |||||||| || ||| ||||||||||||| || ||||||||||||||||| |||||||| || || ||||||||||||||||||| ||||  | |  ||       || |||| | |||   || ||||  | | |      ||   |||| |||||||||| || |  |||   |  |       
TTCACGAGATCTGGACACACTGAGCTGCACGGCAACGCGATAATGATCACCAGCACGATCACTGTGGTCCTGTTTAGCACTATGgtgagtcgtcttgattcctcc-------aatgcaatgtgtcag-ttgtcatgtacgatgccctgacggatctgcattctcacccgaatagtggatgcccaccagtcac

upper sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA10G30020.1 (Glycine max), 5'ss of exon 14
TTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGgtgagtcatct-tactgcaacctatgcctaacgcaa--agcgtcctcttttcatccaagtttgtgccacatgtctgaattctcaccctaaacaggacctcagc
|| || |  || || || |||   ||||   |||||||||| |||||||| |||||||||||||| || ||||| |||||  |||| ||  || | |  || |   | || |   |  |   || ||||  |  |  ||   |||  |      | | |    | |    |   || |    |||  
TTCACCATGTCGGGGCACACTTCACTGCGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgttttgtagtttctgacatccttagccagtgtccattggtt-tctttgttattagaggttattttgtctttgttgcatcactgatattca--

upper sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 13
lower sequence: GLYMA20G37370.1 (Glycine max), 5'ss of exon 14
TTTACAAGATCTGGCCATACTCAGCTGCACGGCAATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGgtgagtcatct-tactgcaacctatgcctaacgcaa--agcgtcctcttttcatccaagtttgtgccacatgtctgaattctcaccctaaacaggacctcagc
|| || |  || || || |||   ||     |||||||||| |||||||| |||||||||||||| || ||||| |||||  |||| ||  || | |  || |   | || |   |  |   || ||||  |  |  |     |  | |     | | |    | |    |   || |    ||   
TTCACCATGTCGGGGCACACTTCACTAAGAAGCAATGCAATCATGATCACAAGCACCATCACTGTTGTGCTTTTCAGCACAGTGgtaagatatttgttttgtagtttctgacatccttagccagtgtccattggttttttttatcagaggaggttattttgtctttgttgcatcactgataatc---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87016324|gb|CI271735.1|CI271735
EST:     ACCAGCACCATCACTGTCGTTCTTTTTAGCACTATG                         GTATTTGGGATGATGACAAAGCCGTTGATCAGGCTGCTGCTACCGGCCTCA
genomic: ACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGgtgagtcatc ... tgtttattagGTATTTGGGATGATGACAAAGCCATTGATCAGGCTGCTGCTACCGGCCTCA
EST: gi|27549114|gb|CA767092.2|CA767092
EST:     ATGCAATAATGATCACCAGCACCATCACTGNCGNTCTTTTTAGCACTATG                         GTATTTGGGATGATGACAA
genomic: ATGCAATAATGATCACCAGCACCATCACTGTCGTTCTTTTTAGCACTATGgtgagtcatc ... tgtttattagGTATTTGGGATGATGACAA