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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGATGCAGATCAAGAATTAGATGACTCTGAGCGCATATTGAGTGGAAAATTAAGTGAAACCAGTGCATGCACTGCTGGTGACCTCTATGACTACAAGgtttggtgtttgcagtcttaaaatttttaatcggtagtaagtttgatctaatacaatcatatatacagttcgaatattttcaagtcaatcatatatacac...

Basic information

species Oryza sativa
transcript LOC_Os07g46450.1
intron # 13
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os07g46450.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G340359_T01 (Zea mays), 5'ss of exon 13
GAATGATGCAGATCAAGAATTAGATGACTCTGAGCGCATATTGAGTGGAAAATTAAGTGAAACCAGTGCATGCACTGCTGGTGACCTCTATGACTACAAGgtttggtgtttgcagtcttaaaatttttaatcggtagtaagtttgatctaatacaatcata-tatacagttcgaatattttcaagtcaatcatatatacac--
 ||||||| ||||||||||||||||||  | ||||| ||| ||| ||||||||| |||||||||||||||||      || ||||||| |||||||||||||||| |   |    | |     ||| |||    | ||     | | |    |||  | |  | ||   ||    |  |        |||  || | | |   
AAATGATGTAGATCAAGAATTAGATGATGCCGAGCGAATACTGAATGGAAAATTGAGTGAAACCAGTGCATGTGTCCATGCTGACCTCCATGACTACAAGgtttgatacatt---tttctgtttttgtaacatattgtgctactaaccatgcacatgcgttctttatttttatggtgatacaggaagaatgttaaaaaaagtt

upper sequence: LOC_Os07g46450.3 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G036872_T02 (Zea mays), 5'ss of exon 13
GAATGATGCAGATCAAGAATTAGATGACTCTGAGCGCATATTGAGTGGAAAATTAAGTGAAACCAGTGCATGCACTGCTGGTGACCTCTATGACTACAAGgtttggtgtttgca-gtcttaaaatttttaatcggtagtaagtttgatctaatac---aatcatatatacagttcgaatattttcaagtcaatcatatatacac
 ||||||| ||||||||||||||||||  | ||||| ||  ||||||||||||| | ||||||||||||| |  ||  || ||||||||||||| |||||||||| | |||     ||||||      || |       | || |     | |      | | |    || |  | ||   | |   ||    |  |       
AAATGATGTAGATCAAGAATTAGATGATGCCGAGCGAATGCTGAGTGGAAAATTCACTGAAACCAGTGCAAGTGCTTGTGCTGACCTCTATGACCACAAGgtttgatatttttttatcttaagtggcatattaaaggacaggtctagcgcagtggtgagagccttcccaccgagccaaaggtcttgggttcgacgcagtc----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669247|gb|CK057933.1|CK057933
EST:     AATTAAGTGAAACCAGTGCATGCACTGCTGGTGACCTCTATGACTACAAG                         GTAGCTGATGATGATTCAGACGGTGAACCTTCTACAGAAGATAAGGCTTTG
genomic: AATTAAGTGAAACCAGTGCATGCACTGCTGGTGACCTCTATGACTACAAGgtttggtgtt ... tgaacgacagGTAGCTGATGATGATTCAGACGGTGAACCTTCTACAGAAGATAAGGCTTTG
EST: gi|87010993|gb|CI286068.1|CI286068
EST:     ATGCACTGCTGGTGACCTCTATGACTACAAG                         GTAGCTGATGATGATTCAGACGGTGAACCTTCTACAGAAGATAAGGCTTTG
genomic: ATGCACTGCTGGTGACCTCTATGACTACAAGgtttggtgtt ... tgaacgacagGTAGCTGATGATGATTCAGACGGTGAACCTTCTACAGAAGATAAGGCTTTG