1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggttgtagtattactaatatgatcttttaatcatttctttattatttctcatctgtactagtgactctacgcttattgattaattctaacata...
species | Oryza sativa |
transcript | LOC_Os07g31460.2 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG GATGTTGGATAATTTACAAGATGCTTGATGEST: gi|29616585|gb|CB621597.1|CB621597
genomic: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggt ... catttttcagGATGTTGGATAATTTACAAGATGCTTGATG
EST: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG GATGTTGGATAATTTACAGGATGCTTGATGGCCAAACTTGCGAGTTGGATTEST: gi|29624539|gb|CB629550.1|CB629550
genomic: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggt ... catttttcagGATGTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATT
EST: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG GATGTTGGATAATTTACAGGATGCTTGATGGCCAAACTTGCGAGTTGGATTEST: gi|29676466|gb|CB672741.1|CB672741
genomic: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggt ... catttttcagGATGTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATT
EST: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG GATGTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATTEST: gi|27548254|gb|CA766230.2|CA766230
genomic: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggt ... catttttcagGATGTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATT
EST: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG GATGTTGGATAATTTACAGGATGCTTGATGGCCAAACTTGCGAGTTGGATTEST: gi|29621977|gb|CB626988.1|CB626988
genomic: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggt ... catttttcagGATGTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATT
EST: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG GATGTTGGATAATTTACAGGATGCTTGATGGCCAAACTTGCGAGTTGGATTEST: gi|29681352|gb|CB677627.1|CB677627
genomic: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggt ... catttttcagGATGTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATT
EST: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAG GATGTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATT
genomic: ATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggt ... catttttcagGATGTTGGATAATTTACAAGATGCTTGATGGCCAAACTTGCGAGTTGGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAACGGCGGCATTTGATGGCATTCGCTCATCCAAATGGGAAGAGCCTGATGGAGCCAAAGgtgatccggttgtagtattactaatatgatcttttaatcatttctttattatttctcatctgtactagtgactctacgcttattgattaattctaacata
- - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - GATGGA